Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 SPDYE17-201ENST00000412399 783 ntBASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 TARDBPP1-201ENST00000442013 1203 ntBASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 SPDYE11-202ENST00000450699 704 ntBASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 SPDYE9P-201ENST00000570642 692 ntBASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 AC015910.1-201ENST00000579400 975 ntBASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 SLC25A6P4-201ENST00000586535 553 ntBASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 AC026120.1-201ENST00000611536 926 ntBASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 SPDYE10P-202ENST00000612005 668 ntBASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 SPDYE8P-202ENST00000612377 668 ntBASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 IRF5-214ENST00000613821 595 ntTSL 5 BASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 AC113189.2-201ENST00000575310 1975 ntTSL 2 BASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 REXO1L4P-201ENST00000605109 1937 ntBASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 CARHSP1-216ENST00000610831 2841 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
CCDC28BQ9BUN5 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 OFD1-204ENST00000398395 3307 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 PCK2-216ENST00000561286 2012 ntTSL 2 BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 SF1-209ENST00000433274 2317 ntTSL 2 BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 AC079140.1-201ENST00000508039 487 ntBASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 RARRES2P9-201ENST00000565168 469 ntBASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 AC106730.1-201ENST00000566722 1090 ntBASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 AC092902.6-201ENST00000641783 218 ntBASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 AC097359.2-201ENST00000604992 2389 ntBASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC14.97□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 93.6 ms