Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Mapt-201ENSMUST00000100347 1362 ntAPPRIS P4 TSL 1 (best) BASIC11.97□□□□□ -0.49
Col28a1Q2UY11 Rabggtb-201ENSMUST00000089950 1381 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
Col28a1Q2UY11 Plagl1-203ENSMUST00000121766 3897 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Col28a1Q2UY11 Nipsnap3b-202ENSMUST00000107665 848 ntTSL 2 BASIC11.97□□□□□ -0.49
Col28a1Q2UY11 Phlda2-201ENSMUST00000010904 757 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Col28a1Q2UY11 Prkaca-ps1-201ENSMUST00000120823 919 ntBASIC11.97□□□□□ -0.49
Col28a1Q2UY11 Gm15479-201ENSMUST00000139309 1133 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Col28a1Q2UY11 Egfl7-208ENSMUST00000149789 683 ntTSL 3 BASIC11.97□□□□□ -0.49
Col28a1Q2UY11 Gm2639-201ENSMUST00000156881 1297 ntBASIC11.97□□□□□ -0.49
Col28a1Q2UY11 1700069L16Rik-203ENSMUST00000162388 706 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Col28a1Q2UY11 Armc2-208ENSMUST00000162405 1135 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Col28a1Q2UY11 Gm43416-201ENSMUST00000201916 1015 ntBASIC11.97□□□□□ -0.49
Col28a1Q2UY11 Trmt112-ps1-201ENSMUST00000202320 375 ntBASIC11.97□□□□□ -0.49
Col28a1Q2UY11 Svip-203ENSMUST00000209193 487 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Col28a1Q2UY11 Gm6013-201ENSMUST00000212264 699 ntBASIC11.97□□□□□ -0.49
Col28a1Q2UY11 Gm45880-201ENSMUST00000213041 853 ntBASIC11.97□□□□□ -0.49
Col28a1Q2UY11 9230020A06Rik-204ENSMUST00000215201 1116 ntTSL 5 BASIC11.97□□□□□ -0.49
Col28a1Q2UY11 CT009713.10-202ENSMUST00000225734 696 ntBASIC11.97□□□□□ -0.49
Col28a1Q2UY11 Mrps22-201ENSMUST00000035034 1197 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Col28a1Q2UY11 Atpif1-201ENSMUST00000067496 539 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Col28a1Q2UY11 Dnal4-202ENSMUST00000069877 1011 ntTSL 5 BASIC11.97□□□□□ -0.49
Col28a1Q2UY11 Fam173a-201ENSMUST00000072735 800 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Col28a1Q2UY11 Coro6-203ENSMUST00000079770 1298 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Col28a1Q2UY11 Gipr-201ENSMUST00000094790 2856 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
Col28a1Q2UY11 Osgin1-206ENSMUST00000152420 2005 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Col28a1Q2UY11 Gm37542-201ENSMUST00000192563 2832 ntBASIC11.97□□□□□ -0.49
Col28a1Q2UY11 Dync1i1-202ENSMUST00000115555 2669 ntAPPRIS ALT1 TSL 5 BASIC11.97□□□□□ -0.49
Col28a1Q2UY11 Atp8a1-202ENSMUST00000072971 7154 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Col28a1Q2UY11 Bdnf-205ENSMUST00000111045 3973 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Col28a1Q2UY11 Gdpd2-201ENSMUST00000019503 2495 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Col28a1Q2UY11 Ptchd3-201ENSMUST00000036690 3194 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Col28a1Q2UY11 Sspn-201ENSMUST00000032383 4431 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Col28a1Q2UY11 Vdr-201ENSMUST00000023119 4370 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Col28a1Q2UY11 Stx18-203ENSMUST00000114126 3002 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Col28a1Q2UY11 Ildr1-201ENSMUST00000023617 3042 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Col28a1Q2UY11 Plrg1-202ENSMUST00000122128 1608 ntTSL 5 BASIC11.97□□□□□ -0.49
Col28a1Q2UY11 Rsph3b-201ENSMUST00000024572 1614 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Col28a1Q2UY11 Klf11-201ENSMUST00000020982 4086 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Col28a1Q2UY11 Lrrc18-204ENSMUST00000120951 1511 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.49
Col28a1Q2UY11 Pcdhgc4-201ENSMUST00000066140 5024 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Col28a1Q2UY11 Dnd1-201ENSMUST00000061522 1451 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Col28a1Q2UY11 Papss1-201ENSMUST00000029666 2600 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Col28a1Q2UY11 Lcor-201ENSMUST00000067795 4810 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Col28a1Q2UY11 CT009713.10-201ENSMUST00000225013 1986 ntBASIC11.96□□□□□ -0.49
Col28a1Q2UY11 4833439L19Rik-208ENSMUST00000153065 2502 ntTSL 5 BASIC11.96□□□□□ -0.49
Col28a1Q2UY11 Olfr56-202ENSMUST00000102785 1930 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Col28a1Q2UY11 Ttc23-202ENSMUST00000107470 1915 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.49
Col28a1Q2UY11 Dis3l-208ENSMUST00000168844 3575 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Col28a1Q2UY11 Gm38049-201ENSMUST00000195698 1372 ntBASIC11.96□□□□□ -0.49
Col28a1Q2UY11 Galntl6-208ENSMUST00000204128 5680 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
Col28a1Q2UY11 Olfr658-202ENSMUST00000210641 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Col28a1Q2UY11 Olfr658-201ENSMUST00000089296 2912 ntAPPRIS P2 TSL 1 (best) BASIC11.96□□□□□ -0.49
Col28a1Q2UY11 Myh6-205ENSMUST00000226297 6008 ntAPPRIS P1 BASIC11.96□□□□□ -0.49
Col28a1Q2UY11 Tacc2-201ENSMUST00000033141 3940 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.49
Col28a1Q2UY11 Padi6-201ENSMUST00000038749 2333 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Col28a1Q2UY11 Rpl38-204ENSMUST00000106602 371 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Col28a1Q2UY11 Pole-203ENSMUST00000112482 747 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Col28a1Q2UY11 Rps6kb1-202ENSMUST00000058286 3250 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Col28a1Q2UY11 Amotl2-211ENSMUST00000153965 4222 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
Col28a1Q2UY11 Cdh22-201ENSMUST00000065438 3702 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Col28a1Q2UY11 Trim46-202ENSMUST00000090924 2721 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Col28a1Q2UY11 Ctdspl2-201ENSMUST00000036647 5053 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.5
Col28a1Q2UY11 Gm10851-201ENSMUST00000192087 1685 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
Col28a1Q2UY11 Gfap-201ENSMUST00000067444 2648 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Col28a1Q2UY11 Gtf2e1-201ENSMUST00000023525 3084 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Col28a1Q2UY11 Ttc4-201ENSMUST00000026480 2121 ntAPPRIS P2 TSL 1 (best) BASIC11.96□□□□□ -0.5
Col28a1Q2UY11 Acsm1-201ENSMUST00000047929 2083 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Col28a1Q2UY11 Acly-201ENSMUST00000007131 4393 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.5
Col28a1Q2UY11 Cd40-201ENSMUST00000017799 2986 ntAPPRIS P4 TSL 1 (best) BASIC11.96□□□□□ -0.5
Col28a1Q2UY11 Ces1d-201ENSMUST00000034172 2004 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Col28a1Q2UY11 Epm2aip1-202ENSMUST00000135807 4245 ntAPPRIS P1 TSL 2 BASIC11.96□□□□□ -0.5
Col28a1Q2UY11 Gm45897-201ENSMUST00000212679 1998 ntTSL 5 BASIC11.96□□□□□ -0.5
Col28a1Q2UY11 Serpinb2-202ENSMUST00000064916 1996 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Col28a1Q2UY11 Wsb2-202ENSMUST00000111959 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.5
Col28a1Q2UY11 Dnmt1-203ENSMUST00000178110 5870 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.5
Col28a1Q2UY11 Gm9008-201ENSMUST00000097218 2353 ntAPPRIS P1 BASIC11.96□□□□□ -0.5
Col28a1Q2UY11 Xpnpep1-209ENSMUST00000183108 4078 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Col28a1Q2UY11 Polr1b-201ENSMUST00000028874 2769 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
Col28a1Q2UY11 Rapgef3-203ENSMUST00000126854 4005 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col28a1Q2UY11 Nmral1-202ENSMUST00000079130 1459 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Col28a1Q2UY11 Rspry1-201ENSMUST00000060389 3852 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col28a1Q2UY11 Serpina11-201ENSMUST00000074693 1447 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col28a1Q2UY11 Alg13-202ENSMUST00000070801 1802 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col28a1Q2UY11 Cog3-203ENSMUST00000227473 4197 ntBASIC11.95□□□□□ -0.5
Col28a1Q2UY11 Ciz1-204ENSMUST00000113334 2871 ntAPPRIS P3 TSL 5 BASIC11.95□□□□□ -0.5
Col28a1Q2UY11 0610040F04Rik-201ENSMUST00000137478 1734 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Col28a1Q2UY11 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col28a1Q2UY11 Xkr5-201ENSMUST00000055503 3176 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Col28a1Q2UY11 BC017643-201ENSMUST00000038709 2417 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col28a1Q2UY11 Krt33a-201ENSMUST00000018399 1683 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col28a1Q2UY11 Lsp1-201ENSMUST00000018963 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col28a1Q2UY11 Adi1-201ENSMUST00000020957 1652 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col28a1Q2UY11 Eif5-212ENSMUST00000222375 3547 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col28a1Q2UY11 Eif5-213ENSMUST00000222388 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col28a1Q2UY11 4933409G03Rik-201ENSMUST00000102713 1263 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col28a1Q2UY11 Gm15703-201ENSMUST00000120250 880 ntBASIC11.95□□□□□ -0.5
Col28a1Q2UY11 Gm14064-201ENSMUST00000134833 727 ntTSL 3 BASIC11.95□□□□□ -0.5
Col28a1Q2UY11 Dnase2a-206ENSMUST00000145292 678 ntTSL 5 BASIC11.95□□□□□ -0.5
Col28a1Q2UY11 Gm15444-201ENSMUST00000148335 388 ntTSL 5 BASIC11.95□□□□□ -0.5
Col28a1Q2UY11 Gm8810-201ENSMUST00000172895 754 ntBASIC11.95□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 55.4 ms