Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC18.98■□□□□ 0.63
SYNE4Q8N205 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SYNE4Q8N205 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
SYNE4Q8N205 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SYNE4Q8N205 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SYNE4Q8N205 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SYNE4Q8N205 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SYNE4Q8N205 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC18.98■□□□□ 0.63
SYNE4Q8N205 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SYNE4Q8N205 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
SYNE4Q8N205 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC18.98■□□□□ 0.63
SYNE4Q8N205 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SYNE4Q8N205 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC18.98■□□□□ 0.63
SYNE4Q8N205 CYP46A4P-201ENST00000414953 267 ntBASIC18.98■□□□□ 0.63
SYNE4Q8N205 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC18.98■□□□□ 0.63
SYNE4Q8N205 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC18.98■□□□□ 0.63
SYNE4Q8N205 MIR4783-201ENST00000580343 82 ntBASIC18.98■□□□□ 0.63
SYNE4Q8N205 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC18.98■□□□□ 0.63
SYNE4Q8N205 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SYNE4Q8N205 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SYNE4Q8N205 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SYNE4Q8N205 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SYNE4Q8N205 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SYNE4Q8N205 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SYNE4Q8N205 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC18.98■□□□□ 0.63
SYNE4Q8N205 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
SYNE4Q8N205 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC18.98■□□□□ 0.63
SYNE4Q8N205 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
SYNE4Q8N205 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SYNE4Q8N205 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
SYNE4Q8N205 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
SYNE4Q8N205 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SYNE4Q8N205 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
SYNE4Q8N205 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SYNE4Q8N205 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SYNE4Q8N205 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SYNE4Q8N205 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
SYNE4Q8N205 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC18.97■□□□□ 0.63
SYNE4Q8N205 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SYNE4Q8N205 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SYNE4Q8N205 DEF8-202ENST00000418391 852 ntTSL 2 BASIC18.97■□□□□ 0.63
SYNE4Q8N205 AC016700.1-201ENST00000429424 312 ntBASIC18.97■□□□□ 0.63
SYNE4Q8N205 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SYNE4Q8N205 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SYNE4Q8N205 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC18.97■□□□□ 0.63
SYNE4Q8N205 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
SYNE4Q8N205 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC18.97■□□□□ 0.63
SYNE4Q8N205 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC18.97■□□□□ 0.63
SYNE4Q8N205 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SYNE4Q8N205 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC18.97■□□□□ 0.63
SYNE4Q8N205 DKFZP434H168-201ENST00000567381 1905 ntBASIC18.97■□□□□ 0.63
SYNE4Q8N205 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
SYNE4Q8N205 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SYNE4Q8N205 AC009093.2-202ENST00000620513 2079 ntBASIC18.97■□□□□ 0.63
SYNE4Q8N205 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SYNE4Q8N205 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC18.97■□□□□ 0.63
SYNE4Q8N205 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC18.97■□□□□ 0.63
SYNE4Q8N205 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
SYNE4Q8N205 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC18.97■□□□□ 0.63
SYNE4Q8N205 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC18.96■□□□□ 0.63
SYNE4Q8N205 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC18.96■□□□□ 0.63
SYNE4Q8N205 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SYNE4Q8N205 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SYNE4Q8N205 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SYNE4Q8N205 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC18.96■□□□□ 0.63
SYNE4Q8N205 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
SYNE4Q8N205 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC18.96■□□□□ 0.63
SYNE4Q8N205 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC18.96■□□□□ 0.63
SYNE4Q8N205 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC18.96■□□□□ 0.63
SYNE4Q8N205 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
SYNE4Q8N205 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SYNE4Q8N205 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
SYNE4Q8N205 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SYNE4Q8N205 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC18.96■□□□□ 0.63
SYNE4Q8N205 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
SYNE4Q8N205 AC079178.1-201ENST00000420915 656 ntBASIC18.96■□□□□ 0.63
SYNE4Q8N205 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC18.96■□□□□ 0.63
SYNE4Q8N205 MESTP3-201ENST00000503460 968 ntBASIC18.96■□□□□ 0.63
SYNE4Q8N205 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC18.96■□□□□ 0.63
SYNE4Q8N205 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC18.96■□□□□ 0.63
SYNE4Q8N205 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC18.96■□□□□ 0.63
SYNE4Q8N205 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC18.96■□□□□ 0.63
SYNE4Q8N205 U62317.3-201ENST00000608319 855 ntBASIC18.96■□□□□ 0.63
SYNE4Q8N205 AC007663.3-201ENST00000609632 465 ntBASIC18.96■□□□□ 0.63
SYNE4Q8N205 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC18.96■□□□□ 0.63
SYNE4Q8N205 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
SYNE4Q8N205 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SYNE4Q8N205 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
SYNE4Q8N205 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC18.96■□□□□ 0.63
SYNE4Q8N205 AL137783.1-201ENST00000623494 1896 ntBASIC18.96■□□□□ 0.63
SYNE4Q8N205 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SYNE4Q8N205 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SYNE4Q8N205 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SYNE4Q8N205 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SYNE4Q8N205 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC18.95■□□□□ 0.62
SYNE4Q8N205 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC18.95■□□□□ 0.62
SYNE4Q8N205 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
SYNE4Q8N205 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
SYNE4Q8N205 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SYNE4Q8N205 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms