Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 AC112945.1-201ENSMUST00000226413 514 ntBASIC14.58□□□□□ -0.08
Col3a1P08121 Mcee-201ENSMUST00000037205 828 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col3a1P08121 Olfr981-201ENSMUST00000059859 997 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
Col3a1P08121 Rsg1-201ENSMUST00000097813 985 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
Col3a1P08121 Bcl2l15-202ENSMUST00000106822 1902 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Col3a1P08121 Gcfc2-201ENSMUST00000043195 4192 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col3a1P08121 Sh2b3-202ENSMUST00000086310 4195 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col3a1P08121 Srr-203ENSMUST00000108448 3239 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
Col3a1P08121 Ptprj-204ENSMUST00000168621 7634 ntAPPRIS P4 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col3a1P08121 Trib1-201ENSMUST00000067543 4330 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col3a1P08121 0610038B21Rik-201ENSMUST00000181420 1687 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Col3a1P08121 Uimc1-202ENSMUST00000099496 1678 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Col3a1P08121 Snap23-202ENSMUST00000110711 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col3a1P08121 Fastkd3-201ENSMUST00000051784 2421 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col3a1P08121 Trpm4-201ENSMUST00000042194 4234 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col3a1P08121 Fgfr3-201ENSMUST00000067150 4218 ntAPPRIS P4 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col3a1P08121 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col3a1P08121 Gm13910-201ENSMUST00000121752 1428 ntBASIC14.58□□□□□ -0.08
Col3a1P08121 Vps36-201ENSMUST00000033866 3574 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col3a1P08121 Sfxn3-203ENSMUST00000111954 2867 ntTSL 5 BASIC14.58□□□□□ -0.08
Col3a1P08121 Tmem39a-201ENSMUST00000002924 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col3a1P08121 Gldn-201ENSMUST00000056740 4658 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col3a1P08121 Dnajc6-204ENSMUST00000106930 5127 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col3a1P08121 Ldb3-204ENSMUST00000064098 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col3a1P08121 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col3a1P08121 Mob3a-201ENSMUST00000003438 2682 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col3a1P08121 Hspa4l-201ENSMUST00000108086 2744 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Col3a1P08121 Kif21a-201ENSMUST00000067205 6307 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col3a1P08121 Sypl-201ENSMUST00000020885 2019 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col3a1P08121 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col3a1P08121 Ift20-202ENSMUST00000108275 582 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col3a1P08121 Gm13133-201ENSMUST00000143888 736 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Col3a1P08121 Gm16740-201ENSMUST00000181819 956 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Col3a1P08121 Gm28686-201ENSMUST00000187404 609 ntBASIC14.57□□□□□ -0.08
Col3a1P08121 Gm29088-201ENSMUST00000189363 581 ntTSL 3 BASIC14.57□□□□□ -0.08
Col3a1P08121 Gm37707-201ENSMUST00000195309 325 ntTSL 3 BASIC14.57□□□□□ -0.08
Col3a1P08121 AC127270.1-201ENSMUST00000221441 491 ntTSL 3 BASIC14.57□□□□□ -0.08
Col3a1P08121 Psmg2-201ENSMUST00000025418 1059 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col3a1P08121 Actg-ps1-201ENSMUST00000099636 1124 ntBASIC14.57□□□□□ -0.08
Col3a1P08121 Zdhhc20-205ENSMUST00000226057 2179 ntAPPRIS ALT2 BASIC14.57□□□□□ -0.08
Col3a1P08121 Tpm1-201ENSMUST00000030185 1797 ntAPPRIS ALT1 TSL 2 BASIC14.57□□□□□ -0.08
Col3a1P08121 3200001D21Rik-201ENSMUST00000221603 2283 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Col3a1P08121 Usp3-211ENSMUST00000174387 1901 ntTSL 5 BASIC14.57□□□□□ -0.08
Col3a1P08121 Six4-201ENSMUST00000043208 6402 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col3a1P08121 Abcb6-201ENSMUST00000027396 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col3a1P08121 Dhx29-201ENSMUST00000038574 4682 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col3a1P08121 Dph6-201ENSMUST00000028640 2632 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Col3a1P08121 Fam71f1-201ENSMUST00000090487 1584 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Col3a1P08121 Tmem206-201ENSMUST00000027940 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col3a1P08121 Islr-201ENSMUST00000041477 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col3a1P08121 Dsel-201ENSMUST00000035462 5759 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col3a1P08121 Fbxo3-201ENSMUST00000028603 4740 ntAPPRIS P4 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col3a1P08121 Acin1-208ENSMUST00000126166 2369 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Col3a1P08121 Rwdd3-205ENSMUST00000106467 1158 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Col3a1P08121 Gm10961-201ENSMUST00000106703 144 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
Col3a1P08121 Wdr45-206ENSMUST00000116634 1250 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
Col3a1P08121 Cspp1-204ENSMUST00000119714 1268 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Col3a1P08121 Gm15610-201ENSMUST00000120584 195 ntBASIC14.57□□□□□ -0.08
Col3a1P08121 Gm16686-201ENSMUST00000141816 396 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
Col3a1P08121 Trub2-210ENSMUST00000177467 744 ntTSL 3 BASIC14.57□□□□□ -0.08
Col3a1P08121 Gm9034-201ENSMUST00000182071 1005 ntBASIC14.57□□□□□ -0.08
Col3a1P08121 Ighv1-60-201ENSMUST00000195816 405 ntBASIC14.57□□□□□ -0.08
Col3a1P08121 Gm7600-201ENSMUST00000209657 785 ntBASIC14.57□□□□□ -0.08
Col3a1P08121 Colec11-203ENSMUST00000220836 887 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Col3a1P08121 AC134860.1-201ENSMUST00000224867 660 ntBASIC14.57□□□□□ -0.08
Col3a1P08121 Ngdn-201ENSMUST00000022815 1200 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col3a1P08121 Cd7-201ENSMUST00000026159 982 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col3a1P08121 Cd320-202ENSMUST00000087559 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col3a1P08121 Egr3-204ENSMUST00000225200 3940 ntAPPRIS P2 BASIC14.56□□□□□ -0.08
Col3a1P08121 Gpr35-205ENSMUST00000186298 2647 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col3a1P08121 B230398E01Rik-201ENSMUST00000125186 1958 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Col3a1P08121 Lin37-202ENSMUST00000108164 1312 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Col3a1P08121 8430408G22Rik-202ENSMUST00000178241 1317 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col3a1P08121 Enc1-201ENSMUST00000041623 4737 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col3a1P08121 Fut11-201ENSMUST00000048016 4163 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col3a1P08121 Ano6-201ENSMUST00000071874 4927 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col3a1P08121 Zmym1-202ENSMUST00000106099 2982 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col3a1P08121 Senp3-201ENSMUST00000005336 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col3a1P08121 Slc24a4-201ENSMUST00000079020 2337 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col3a1P08121 Gm8155-201ENSMUST00000216363 1612 ntBASIC14.56□□□□□ -0.08
Col3a1P08121 Catsper4-201ENSMUST00000055892 1725 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col3a1P08121 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col3a1P08121 Rec8-201ENSMUST00000002395 2184 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col3a1P08121 Nfatc4-201ENSMUST00000024179 3267 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col3a1P08121 AC122840.1-201ENSMUST00000220915 3334 ntBASIC14.56□□□□□ -0.08
Col3a1P08121 Rara-201ENSMUST00000068133 3384 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col3a1P08121 Jmjd8-205ENSMUST00000133595 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col3a1P08121 Gm22144-201ENSMUST00000157402 102 ntBASIC14.56□□□□□ -0.08
Col3a1P08121 Gm19705-203ENSMUST00000181491 678 ntTSL 5 BASIC14.56□□□□□ -0.08
Col3a1P08121 Gm9192-201ENSMUST00000183221 985 ntBASIC14.56□□□□□ -0.08
Col3a1P08121 3110080O07Rik-201ENSMUST00000193469 1021 ntBASIC14.56□□□□□ -0.08
Col3a1P08121 Olfr707-202ENSMUST00000208759 1242 ntAPPRIS P1 TSL 3 BASIC14.56□□□□□ -0.08
Col3a1P08121 4930448E22Rik-203ENSMUST00000215349 299 ntTSL 3 BASIC14.56□□□□□ -0.08
Col3a1P08121 AC135469.1-201ENSMUST00000225984 772 ntBASIC14.56□□□□□ -0.08
Col3a1P08121 Emp3-201ENSMUST00000038876 736 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col3a1P08121 Prm3-201ENSMUST00000050864 410 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
Col3a1P08121 Pam-201ENSMUST00000058762 4095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col3a1P08121 Tnk2os-201ENSMUST00000141256 1392 ntTSL 2 BASIC14.56□□□□□ -0.08
Col3a1P08121 Calcoco1-201ENSMUST00000023818 2822 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col3a1P08121 Nrf1-219ENSMUST00000167972 1541 ntTSL 5 BASIC14.56□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 50.3 ms