Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC39Q9UFE4 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC39Q9UFE4 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC17.98■□□□□ 0.47
CCDC39Q9UFE4 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC39Q9UFE4 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC39Q9UFE4 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC39Q9UFE4 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC39Q9UFE4 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC17.98■□□□□ 0.47
CCDC39Q9UFE4 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC17.98■□□□□ 0.47
CCDC39Q9UFE4 GPS2P2-201ENST00000430745 888 ntBASIC17.98■□□□□ 0.47
CCDC39Q9UFE4 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC17.98■□□□□ 0.47
CCDC39Q9UFE4 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC17.98■□□□□ 0.47
CCDC39Q9UFE4 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC17.98■□□□□ 0.47
CCDC39Q9UFE4 SNHG9-202ENST00000564014 471 ntBASIC17.98■□□□□ 0.47
CCDC39Q9UFE4 AC026150.2-201ENST00000564693 1156 ntBASIC17.98■□□□□ 0.47
CCDC39Q9UFE4 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
CCDC39Q9UFE4 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC17.98■□□□□ 0.47
CCDC39Q9UFE4 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
CCDC39Q9UFE4 METTL23-205ENST00000588302 925 ntTSL 5 BASIC17.98■□□□□ 0.47
CCDC39Q9UFE4 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC39Q9UFE4 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
CCDC39Q9UFE4 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
CCDC39Q9UFE4 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
CCDC39Q9UFE4 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC17.98■□□□□ 0.47
CCDC39Q9UFE4 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC39Q9UFE4 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC39Q9UFE4 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC39Q9UFE4 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC39Q9UFE4 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC39Q9UFE4 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC39Q9UFE4 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
CCDC39Q9UFE4 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
CCDC39Q9UFE4 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC39Q9UFE4 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
CCDC39Q9UFE4 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC39Q9UFE4 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC39Q9UFE4 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC17.98■□□□□ 0.47
CCDC39Q9UFE4 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC17.98■□□□□ 0.47
CCDC39Q9UFE4 AC126365.1-201ENST00000578585 1514 ntBASIC17.98■□□□□ 0.47
CCDC39Q9UFE4 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
CCDC39Q9UFE4 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC17.97■□□□□ 0.47
CCDC39Q9UFE4 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC17.97■□□□□ 0.47
CCDC39Q9UFE4 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC17.97■□□□□ 0.47
CCDC39Q9UFE4 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
CCDC39Q9UFE4 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC17.97■□□□□ 0.47
CCDC39Q9UFE4 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC17.97■□□□□ 0.47
CCDC39Q9UFE4 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC39Q9UFE4 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC39Q9UFE4 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC39Q9UFE4 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC39Q9UFE4 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
CCDC39Q9UFE4 RPL30-202ENST00000396070 440 ntTSL 2 BASIC17.97■□□□□ 0.47
CCDC39Q9UFE4 KRT18P13-201ENST00000400056 1290 ntBASIC17.97■□□□□ 0.47
CCDC39Q9UFE4 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
CCDC39Q9UFE4 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC17.97■□□□□ 0.47
CCDC39Q9UFE4 SPDYE14P-201ENST00000442619 822 ntBASIC17.97■□□□□ 0.47
CCDC39Q9UFE4 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC17.97■□□□□ 0.47
CCDC39Q9UFE4 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
CCDC39Q9UFE4 AP006288.1-201ENST00000446065 395 ntBASIC17.97■□□□□ 0.47
CCDC39Q9UFE4 ELP6-209ENST00000446787 894 ntTSL 3 BASIC17.97■□□□□ 0.47
CCDC39Q9UFE4 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC17.97■□□□□ 0.47
CCDC39Q9UFE4 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC39Q9UFE4 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC17.97■□□□□ 0.47
CCDC39Q9UFE4 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC17.97■□□□□ 0.47
CCDC39Q9UFE4 AC105021.1-202ENST00000570572 669 ntBASIC17.97■□□□□ 0.47
CCDC39Q9UFE4 AL450472.2-201ENST00000603663 1156 ntBASIC17.97■□□□□ 0.47
CCDC39Q9UFE4 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC39Q9UFE4 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC39Q9UFE4 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC39Q9UFE4 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC39Q9UFE4 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC17.97■□□□□ 0.47
CCDC39Q9UFE4 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC39Q9UFE4 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC17.97■□□□□ 0.47
CCDC39Q9UFE4 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC17.97■□□□□ 0.47
CCDC39Q9UFE4 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC39Q9UFE4 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC17.97■□□□□ 0.47
CCDC39Q9UFE4 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC39Q9UFE4 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC39Q9UFE4 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC39Q9UFE4 AC010327.5-201ENST00000586923 3061 ntBASIC17.97■□□□□ 0.47
CCDC39Q9UFE4 AC140479.7-201ENST00000636301 2332 ntBASIC17.97■□□□□ 0.47
CCDC39Q9UFE4 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC39Q9UFE4 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC39Q9UFE4 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC39Q9UFE4 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC39Q9UFE4 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC39Q9UFE4 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC39Q9UFE4 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC17.96■□□□□ 0.47
CCDC39Q9UFE4 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC39Q9UFE4 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC39Q9UFE4 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC39Q9UFE4 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
CCDC39Q9UFE4 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC39Q9UFE4 CNN2P11-201ENST00000429351 262 ntBASIC17.96■□□□□ 0.47
CCDC39Q9UFE4 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC17.96■□□□□ 0.47
CCDC39Q9UFE4 PHKG1P2-201ENST00000457537 863 ntBASIC17.96■□□□□ 0.47
CCDC39Q9UFE4 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC17.96■□□□□ 0.47
CCDC39Q9UFE4 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC39Q9UFE4 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC17.96■□□□□ 0.47
CCDC39Q9UFE4 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 63.5 ms