Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
CPNE4Q96A23 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
CPNE4Q96A23 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC13.92□□□□□ -0.18
CPNE4Q96A23 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CPNE4Q96A23 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
CPNE4Q96A23 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
CPNE4Q96A23 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CPNE4Q96A23 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
CPNE4Q96A23 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC13.92□□□□□ -0.18
CPNE4Q96A23 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CPNE4Q96A23 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CPNE4Q96A23 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
CPNE4Q96A23 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC13.92□□□□□ -0.18
CPNE4Q96A23 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CPNE4Q96A23 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
CPNE4Q96A23 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
CPNE4Q96A23 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CPNE4Q96A23 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CPNE4Q96A23 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CPNE4Q96A23 AC104581.4-201ENST00000623126 3052 ntBASIC13.92□□□□□ -0.18
CPNE4Q96A23 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC13.92□□□□□ -0.18
CPNE4Q96A23 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
CPNE4Q96A23 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC13.91□□□□□ -0.18
CPNE4Q96A23 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CPNE4Q96A23 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CPNE4Q96A23 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CPNE4Q96A23 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CPNE4Q96A23 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CPNE4Q96A23 AC020658.6-201ENST00000623564 1870 ntBASIC13.91□□□□□ -0.18
CPNE4Q96A23 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
CPNE4Q96A23 AMT-232ENST00000636199 1546 ntTSL 5 BASIC13.91□□□□□ -0.18
CPNE4Q96A23 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
CPNE4Q96A23 POLL-217ENST00000628479 1953 ntTSL 5 BASIC13.91□□□□□ -0.18
CPNE4Q96A23 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CPNE4Q96A23 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
CPNE4Q96A23 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC13.91□□□□□ -0.18
CPNE4Q96A23 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC13.91□□□□□ -0.18
CPNE4Q96A23 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CPNE4Q96A23 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CPNE4Q96A23 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CPNE4Q96A23 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC13.91□□□□□ -0.18
CPNE4Q96A23 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
CPNE4Q96A23 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC13.91□□□□□ -0.18
CPNE4Q96A23 DGCR5-201ENST00000399539 862 ntBASIC13.91□□□□□ -0.18
CPNE4Q96A23 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
CPNE4Q96A23 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC13.91□□□□□ -0.18
CPNE4Q96A23 SOCS2P1-201ENST00000417727 557 ntBASIC13.91□□□□□ -0.18
CPNE4Q96A23 AC098850.1-201ENST00000419919 790 ntBASIC13.91□□□□□ -0.18
CPNE4Q96A23 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC13.91□□□□□ -0.18
CPNE4Q96A23 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC13.91□□□□□ -0.18
CPNE4Q96A23 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC13.91□□□□□ -0.18
CPNE4Q96A23 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC13.91□□□□□ -0.18
CPNE4Q96A23 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC13.91□□□□□ -0.18
CPNE4Q96A23 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC13.91□□□□□ -0.18
CPNE4Q96A23 CECR7-204ENST00000609932 568 ntTSL 2 BASIC13.91□□□□□ -0.18
CPNE4Q96A23 MIR8072-201ENST00000614241 80 ntBASIC13.91□□□□□ -0.18
CPNE4Q96A23 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC13.91□□□□□ -0.18
CPNE4Q96A23 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC13.91□□□□□ -0.18
CPNE4Q96A23 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC13.91□□□□□ -0.18
CPNE4Q96A23 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC13.91□□□□□ -0.18
CPNE4Q96A23 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
CPNE4Q96A23 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
CPNE4Q96A23 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
CPNE4Q96A23 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CPNE4Q96A23 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CPNE4Q96A23 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC13.91□□□□□ -0.18
CPNE4Q96A23 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC13.91□□□□□ -0.18
CPNE4Q96A23 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CPNE4Q96A23 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CPNE4Q96A23 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC13.91□□□□□ -0.18
CPNE4Q96A23 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CPNE4Q96A23 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
CPNE4Q96A23 AC087481.3-201ENST00000602886 1894 ntBASIC13.91□□□□□ -0.18
CPNE4Q96A23 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CPNE4Q96A23 MFF-204ENST00000353339 2186 ntTSL 5 BASIC13.9□□□□□ -0.18
CPNE4Q96A23 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CPNE4Q96A23 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CPNE4Q96A23 CU639417.3-201ENST00000624240 1404 ntBASIC13.9□□□□□ -0.18
CPNE4Q96A23 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CPNE4Q96A23 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CPNE4Q96A23 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
CPNE4Q96A23 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CPNE4Q96A23 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC13.9□□□□□ -0.18
CPNE4Q96A23 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC13.9□□□□□ -0.18
CPNE4Q96A23 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
CPNE4Q96A23 AC090616.6-203ENST00000579186 1945 ntBASIC13.9□□□□□ -0.18
CPNE4Q96A23 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CPNE4Q96A23 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC13.9□□□□□ -0.18
CPNE4Q96A23 WARS-232ENST00000556645 2508 ntTSL 5 BASIC13.9□□□□□ -0.18
CPNE4Q96A23 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
CPNE4Q96A23 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CPNE4Q96A23 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CPNE4Q96A23 COPE-202ENST00000349893 948 ntTSL 2 BASIC13.9□□□□□ -0.18
CPNE4Q96A23 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CPNE4Q96A23 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC13.9□□□□□ -0.18
CPNE4Q96A23 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC13.9□□□□□ -0.18
CPNE4Q96A23 AL162726.2-201ENST00000438986 1017 ntBASIC13.9□□□□□ -0.18
CPNE4Q96A23 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC13.9□□□□□ -0.18
CPNE4Q96A23 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC13.9□□□□□ -0.18
CPNE4Q96A23 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC13.9□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms