Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 1700028J19Rik-201ENSMUST00000037220 1245 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trim47Q8C0E3 Gm44758-201ENSMUST00000206096 2068 ntBASIC13.74□□□□□ -0.21
Trim47Q8C0E3 Chpf2-202ENSMUST00000121863 3715 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
Trim47Q8C0E3 Rbm39-203ENSMUST00000109587 2810 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trim47Q8C0E3 Nr2c2-202ENSMUST00000113463 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trim47Q8C0E3 Cep164-201ENSMUST00000117194 5541 ntAPPRIS P2 TSL 5 BASIC13.74□□□□□ -0.21
Trim47Q8C0E3 Pxdn-202ENSMUST00000122328 6614 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trim47Q8C0E3 Ntrk2-208ENSMUST00000225583 2719 ntBASIC13.74□□□□□ -0.21
Trim47Q8C0E3 Ggn-202ENSMUST00000098609 2653 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trim47Q8C0E3 Kdm4b-201ENSMUST00000025036 4577 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trim47Q8C0E3 Sgk3-202ENSMUST00000166384 3706 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trim47Q8C0E3 Arrb1-201ENSMUST00000032995 3715 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Trim47Q8C0E3 Ank2-217ENSMUST00000182610 2231 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Trim47Q8C0E3 Trim50-202ENSMUST00000111180 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trim47Q8C0E3 4933424N20Rik-201ENSMUST00000200749 1463 ntBASIC13.74□□□□□ -0.21
Trim47Q8C0E3 Txlng-203ENSMUST00000112315 2525 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Trim47Q8C0E3 BC055324-202ENSMUST00000097493 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trim47Q8C0E3 Stpg3-201ENSMUST00000043774 1430 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trim47Q8C0E3 Eif5b-201ENSMUST00000027252 7797 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
Trim47Q8C0E3 Rita1-207ENSMUST00000177800 1668 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
Trim47Q8C0E3 Sgf29-201ENSMUST00000032956 1312 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trim47Q8C0E3 Prr15l-201ENSMUST00000054311 1342 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trim47Q8C0E3 Dnm2-206ENSMUST00000172482 2613 ntAPPRIS P4 TSL 5 BASIC13.73□□□□□ -0.21
Trim47Q8C0E3 Dusp19-201ENSMUST00000028384 1632 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trim47Q8C0E3 Rbm39-217ENSMUST00000146297 2580 ntAPPRIS ALT1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trim47Q8C0E3 Gba-202ENSMUST00000167998 1938 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trim47Q8C0E3 Dab2ip-204ENSMUST00000112983 6051 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trim47Q8C0E3 Steap3-204ENSMUST00000112643 2873 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Trim47Q8C0E3 Eif3i-201ENSMUST00000102593 1123 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trim47Q8C0E3 Gm12216-202ENSMUST00000120776 826 ntAPPRIS ALT2 TSL 2 BASIC13.73□□□□□ -0.21
Trim47Q8C0E3 Gm13391-202ENSMUST00000147685 816 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Trim47Q8C0E3 Gm13165-201ENSMUST00000152923 383 ntTSL 5 BASIC13.73□□□□□ -0.21
Trim47Q8C0E3 Ccdc28a-203ENSMUST00000173243 590 ntTSL 5 BASIC13.73□□□□□ -0.21
Trim47Q8C0E3 Gm26602-201ENSMUST00000181321 285 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
Trim47Q8C0E3 Gm8856-201ENSMUST00000185254 1144 ntBASIC13.73□□□□□ -0.21
Trim47Q8C0E3 Gm28511-201ENSMUST00000191594 450 ntTSL 3 BASIC13.73□□□□□ -0.21
Trim47Q8C0E3 Gm19605-202ENSMUST00000221514 1084 ntTSL 5 BASIC13.73□□□□□ -0.21
Trim47Q8C0E3 AC123665.1-201ENSMUST00000228204 438 ntBASIC13.73□□□□□ -0.21
Trim47Q8C0E3 AC124408.1-201ENSMUST00000228938 707 ntBASIC13.73□□□□□ -0.21
Trim47Q8C0E3 Fam96a-201ENSMUST00000034945 1240 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trim47Q8C0E3 Gm9996-201ENSMUST00000070359 913 ntBASIC13.73□□□□□ -0.21
Trim47Q8C0E3 Aurkc-201ENSMUST00000086248 1154 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trim47Q8C0E3 Prrc2a-201ENSMUST00000025253 6888 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trim47Q8C0E3 Zbtb7b-203ENSMUST00000107433 3650 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trim47Q8C0E3 Afdn-216ENSMUST00000170827 7338 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
Trim47Q8C0E3 Alpk3-201ENSMUST00000107348 6369 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trim47Q8C0E3 Zfp142-203ENSMUST00000113737 7473 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trim47Q8C0E3 Myh3-201ENSMUST00000007301 5992 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
Trim47Q8C0E3 Sh3gl3-206ENSMUST00000179318 1489 ntTSL 5 BASIC13.73□□□□□ -0.21
Trim47Q8C0E3 Gm43908-201ENSMUST00000205074 1472 ntBASIC13.73□□□□□ -0.21
Trim47Q8C0E3 Rpl22-208ENSMUST00000188151 2048 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trim47Q8C0E3 Gm10578-202ENSMUST00000211070 2876 ntTSL 2 BASIC13.73□□□□□ -0.21
Trim47Q8C0E3 Dpm2-203ENSMUST00000140592 1412 ntTSL 5 BASIC13.73□□□□□ -0.21
Trim47Q8C0E3 Tspan1-201ENSMUST00000030465 1985 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trim47Q8C0E3 Myh14-203ENSMUST00000107900 6400 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
Trim47Q8C0E3 Rgs17-203ENSMUST00000117676 1651 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trim47Q8C0E3 Lsp1-201ENSMUST00000018963 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trim47Q8C0E3 Otub2-201ENSMUST00000021620 2791 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trim47Q8C0E3 Ppfia4-201ENSMUST00000168515 6067 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trim47Q8C0E3 Gimap3-202ENSMUST00000204036 2145 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trim47Q8C0E3 8430408G22Rik-201ENSMUST00000067354 1339 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trim47Q8C0E3 Tspan32-201ENSMUST00000009396 1582 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trim47Q8C0E3 Kmt5b-205ENSMUST00000113972 4159 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
Trim47Q8C0E3 Cog7-203ENSMUST00000205438 3355 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Trim47Q8C0E3 Gm24934-201ENSMUST00000103764 111 ntBASIC13.72□□□□□ -0.21
Trim47Q8C0E3 Inca1-203ENSMUST00000108542 1080 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trim47Q8C0E3 Gm26361-201ENSMUST00000158868 186 ntBASIC13.72□□□□□ -0.21
Trim47Q8C0E3 Magohb-205ENSMUST00000173837 897 ntTSL 5 BASIC13.72□□□□□ -0.21
Trim47Q8C0E3 Gm20825-201ENSMUST00000178149 1226 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trim47Q8C0E3 Gm29199-201ENSMUST00000187766 775 ntBASIC13.72□□□□□ -0.21
Trim47Q8C0E3 Gm35409-201ENSMUST00000196412 1102 ntTSL 5 BASIC13.72□□□□□ -0.21
Trim47Q8C0E3 Gm33474-201ENSMUST00000199486 1231 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Trim47Q8C0E3 Gm44262-201ENSMUST00000204969 372 ntBASIC13.72□□□□□ -0.21
Trim47Q8C0E3 Fxyd1-217ENSMUST00000206860 594 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Trim47Q8C0E3 Rassf5-205ENSMUST00000212202 958 ntTSL 5 BASIC13.72□□□□□ -0.21
Trim47Q8C0E3 Mt2-202ENSMUST00000212806 388 ntTSL 2 BASIC13.72□□□□□ -0.21
Trim47Q8C0E3 Pglyrp1-201ENSMUST00000032573 694 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trim47Q8C0E3 Hesx1-201ENSMUST00000035433 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trim47Q8C0E3 Gm10271-201ENSMUST00000092165 156 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Trim47Q8C0E3 Islr-201ENSMUST00000041477 2223 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trim47Q8C0E3 Vsir-203ENSMUST00000105460 4843 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trim47Q8C0E3 Vsir-201ENSMUST00000020301 4846 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trim47Q8C0E3 Atp8a1-201ENSMUST00000037380 8178 ntAPPRIS P4 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trim47Q8C0E3 Zscan10-202ENSMUST00000115509 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trim47Q8C0E3 C230034O21Rik-201ENSMUST00000153659 2836 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Trim47Q8C0E3 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trim47Q8C0E3 Sh3bp2-202ENSMUST00000101316 3031 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trim47Q8C0E3 Phactr3-205ENSMUST00000108917 4858 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Trim47Q8C0E3 BC052040-203ENSMUST00000166472 2770 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Trim47Q8C0E3 Dennd6b-201ENSMUST00000078953 4607 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trim47Q8C0E3 Fbxl12-202ENSMUST00000086459 2086 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trim47Q8C0E3 Amz2-203ENSMUST00000103061 1832 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trim47Q8C0E3 Prrc2b-201ENSMUST00000036691 8612 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trim47Q8C0E3 Gm8038-201ENSMUST00000164674 2044 ntBASIC13.71□□□□□ -0.21
Trim47Q8C0E3 Pex2-204ENSMUST00000165309 2038 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
Trim47Q8C0E3 Gm4735-201ENSMUST00000138679 1302 ntBASIC13.71□□□□□ -0.21
Trim47Q8C0E3 Gm5855-201ENSMUST00000200240 1305 ntBASIC13.71□□□□□ -0.21
Trim47Q8C0E3 Mkl1-209ENSMUST00000149582 4366 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Trim47Q8C0E3 Mapk8-204ENSMUST00000111944 1528 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trim47Q8C0E3 Ccdc85a-204ENSMUST00000109502 5220 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 38.4 ms