Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Arhgef4-201ENSMUST00000047664 3287 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Clp1Q99LI9 Bap1-201ENSMUST00000022458 3460 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Clp1Q99LI9 Spock1-205ENSMUST00000187852 3113 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Clp1Q99LI9 Nudt5-205ENSMUST00000179748 1590 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
Clp1Q99LI9 Ctbs-201ENSMUST00000029840 2629 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
Clp1Q99LI9 Adgrl1-204ENSMUST00000131717 5152 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Clp1Q99LI9 Nynrin-202ENSMUST00000168479 7511 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
Clp1Q99LI9 Klhl30-201ENSMUST00000027533 3089 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Clp1Q99LI9 Nek1-201ENSMUST00000034065 5401 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
Clp1Q99LI9 Ntm-203ENSMUST00000115237 2039 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Clp1Q99LI9 Spon2-201ENSMUST00000046186 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Clp1Q99LI9 Rbms1-201ENSMUST00000028347 4436 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Clp1Q99LI9 Ddx55-202ENSMUST00000111438 2737 ntTSL 2 BASIC13.06□□□□□ -0.32
Clp1Q99LI9 Lmntd2-201ENSMUST00000026573 2095 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Clp1Q99LI9 Oxr1-204ENSMUST00000110297 4596 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Clp1Q99LI9 Styxl1-208ENSMUST00000178515 1651 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Clp1Q99LI9 Gimap3-202ENSMUST00000204036 2145 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Clp1Q99LI9 Mllt6-201ENSMUST00000044730 7274 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Clp1Q99LI9 Prpf38b-201ENSMUST00000029480 3026 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Clp1Q99LI9 Otop3-202ENSMUST00000106543 2369 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Clp1Q99LI9 Zfp1-203ENSMUST00000212072 1930 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Clp1Q99LI9 Rcan1-201ENSMUST00000023672 2192 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Clp1Q99LI9 Smarca4-204ENSMUST00000174008 5405 ntAPPRIS ALT1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Clp1Q99LI9 Ptger3-201ENSMUST00000041175 3148 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Clp1Q99LI9 Gm7722-201ENSMUST00000120646 741 ntBASIC13.06□□□□□ -0.32
Clp1Q99LI9 Gm14585-201ENSMUST00000120713 634 ntBASIC13.06□□□□□ -0.32
Clp1Q99LI9 Tsc22d1-206ENSMUST00000134109 801 ntTSL 2 BASIC13.06□□□□□ -0.32
Clp1Q99LI9 2310057J18Rik-204ENSMUST00000152363 1043 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Clp1Q99LI9 Gm22144-201ENSMUST00000157402 102 ntBASIC13.06□□□□□ -0.32
Clp1Q99LI9 Rprl1-201ENSMUST00000158050 327 ntBASIC13.06□□□□□ -0.32
Clp1Q99LI9 Gm22138-201ENSMUST00000158748 128 ntBASIC13.06□□□□□ -0.32
Clp1Q99LI9 1700029J03Rik-201ENSMUST00000185803 789 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Clp1Q99LI9 AC159462.1-201ENSMUST00000214822 687 ntTSL 5 BASIC13.06□□□□□ -0.32
Clp1Q99LI9 AC153505.1-201ENSMUST00000218819 1071 ntBASIC13.06□□□□□ -0.32
Clp1Q99LI9 Sat1-201ENSMUST00000026318 1162 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Clp1Q99LI9 Lce3d-201ENSMUST00000059053 491 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Clp1Q99LI9 Actg-ps1-201ENSMUST00000099636 1124 ntBASIC13.06□□□□□ -0.32
Clp1Q99LI9 Hoxc4-201ENSMUST00000100164 1983 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Clp1Q99LI9 Nkx6-3-201ENSMUST00000071588 2238 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Clp1Q99LI9 Olfr157-202ENSMUST00000215442 1766 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
Clp1Q99LI9 Steap2-201ENSMUST00000015797 3657 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Clp1Q99LI9 Gsg1l-201ENSMUST00000073935 3923 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Clp1Q99LI9 Alg10b-201ENSMUST00000100309 3727 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Clp1Q99LI9 Apbb2-203ENSMUST00000159512 6632 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Clp1Q99LI9 Gm1661-203ENSMUST00000165128 1837 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
Clp1Q99LI9 Laptm5-207ENSMUST00000151698 2600 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Clp1Q99LI9 Srebf2-201ENSMUST00000023100 4989 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Clp1Q99LI9 B430305J03Rik-201ENSMUST00000066298 3702 ntAPPRIS P1 BASIC13.05□□□□□ -0.32
Clp1Q99LI9 Pphln1-204ENSMUST00000165935 3473 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Clp1Q99LI9 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Clp1Q99LI9 Rdh8-201ENSMUST00000066387 1405 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
Clp1Q99LI9 Slc2a4-203ENSMUST00000141837 1776 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Clp1Q99LI9 Slc35b3-202ENSMUST00000167513 1778 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
Clp1Q99LI9 Gm43045-201ENSMUST00000198725 2095 ntBASIC13.05□□□□□ -0.32
Clp1Q99LI9 Scg3-201ENSMUST00000034699 2384 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Clp1Q99LI9 Neu2-204ENSMUST00000165109 1824 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
Clp1Q99LI9 Gm12798-201ENSMUST00000124786 666 ntTSL 5 BASIC13.05□□□□□ -0.32
Clp1Q99LI9 Gm13073-201ENSMUST00000134059 486 ntTSL 3 BASIC13.05□□□□□ -0.32
Clp1Q99LI9 Gm17135-201ENSMUST00000167009 564 ntTSL 3 BASIC13.05□□□□□ -0.32
Clp1Q99LI9 Gm17231-203ENSMUST00000170133 637 ntTSL 3 BASIC13.05□□□□□ -0.32
Clp1Q99LI9 4930562C15Rik-202ENSMUST00000171105 1299 ntTSL 2 BASIC13.05□□□□□ -0.32
Clp1Q99LI9 Gm37905-201ENSMUST00000195310 341 ntBASIC13.05□□□□□ -0.32
Clp1Q99LI9 Gm18711-201ENSMUST00000199341 750 ntBASIC13.05□□□□□ -0.32
Clp1Q99LI9 Gm40709-203ENSMUST00000219695 973 ntTSL 5 BASIC13.05□□□□□ -0.32
Clp1Q99LI9 5830428M24Rik-204ENSMUST00000223143 1034 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Clp1Q99LI9 CT025551.1-201ENSMUST00000223996 692 ntBASIC13.05□□□□□ -0.32
Clp1Q99LI9 Sstr2-201ENSMUST00000067591 1041 ntTSL 2 BASIC13.05□□□□□ -0.32
Clp1Q99LI9 Hsd3b4-201ENSMUST00000179429 1575 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
Clp1Q99LI9 Gm10681-203ENSMUST00000186215 1575 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
Clp1Q99LI9 F7-201ENSMUST00000033820 1859 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Clp1Q99LI9 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Clp1Q99LI9 Efna1-202ENSMUST00000118587 1632 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Clp1Q99LI9 Def8-203ENSMUST00000093049 1909 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Clp1Q99LI9 Gtf2i-206ENSMUST00000172715 4114 ntTSL 5 BASIC13.05□□□□□ -0.32
Clp1Q99LI9 Syt12-201ENSMUST00000059295 3581 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Clp1Q99LI9 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC13.05□□□□□ -0.32
Clp1Q99LI9 Pisd-ps2-201ENSMUST00000127960 1424 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Clp1Q99LI9 Mtch2-211ENSMUST00000150232 2377 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Clp1Q99LI9 Cyp2c53-ps-203ENSMUST00000176493 1443 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Clp1Q99LI9 Pigg-202ENSMUST00000118910 3030 ntTSL 5 BASIC13.05□□□□□ -0.32
Clp1Q99LI9 2810402E24Rik-201ENSMUST00000190699 3040 ntBASIC13.05□□□□□ -0.32
Clp1Q99LI9 Tcf4-204ENSMUST00000114978 2437 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Clp1Q99LI9 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Clp1Q99LI9 Aph1a-201ENSMUST00000015894 2863 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Clp1Q99LI9 1300017J02Rik-202ENSMUST00000123530 1874 ntTSL 5 BASIC13.04□□□□□ -0.32
Clp1Q99LI9 Adam22-207ENSMUST00000115388 9161 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
Clp1Q99LI9 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Clp1Q99LI9 Atg7-207ENSMUST00000182428 2264 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
Clp1Q99LI9 Traf6-201ENSMUST00000004949 6169 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Clp1Q99LI9 Radil-204ENSMUST00000110785 3708 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Clp1Q99LI9 Phactr3-204ENSMUST00000108916 2656 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Clp1Q99LI9 Cdc20b-201ENSMUST00000109244 1620 ntAPPRIS P2 TSL 5 BASIC13.04□□□□□ -0.32
Clp1Q99LI9 Mrpl55-202ENSMUST00000108784 729 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Clp1Q99LI9 Gm11892-201ENSMUST00000117711 1202 ntBASIC13.04□□□□□ -0.32
Clp1Q99LI9 Gm15595-201ENSMUST00000120840 961 ntBASIC13.04□□□□□ -0.32
Clp1Q99LI9 Gm11246-201ENSMUST00000120880 345 ntBASIC13.04□□□□□ -0.32
Clp1Q99LI9 Mir1901-201ENSMUST00000122616 78 ntBASIC13.04□□□□□ -0.32
Clp1Q99LI9 Gm4726-201ENSMUST00000135604 736 ntBASIC13.04□□□□□ -0.32
Clp1Q99LI9 Adap2os-201ENSMUST00000140556 984 ntTSL 5 BASIC13.04□□□□□ -0.32
Clp1Q99LI9 Gm6019-201ENSMUST00000148369 736 ntBASIC13.04□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 51.3 ms