Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Pex2-206ENSMUST00000195855 1587 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Usp40Q8BWR4 AC154671.1-201ENSMUST00000228617 1578 ntBASIC16.94■□□□□ 0.3
Usp40Q8BWR4 Ssr1-203ENSMUST00000225246 1825 ntBASIC16.93■□□□□ 0.3
Usp40Q8BWR4 Aaas-201ENSMUST00000041208 1816 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Usp40Q8BWR4 Cd163l1-203ENSMUST00000209398 3437 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Usp40Q8BWR4 Arhgap22-202ENSMUST00000111956 2596 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Usp40Q8BWR4 Itgav-201ENSMUST00000028499 7054 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Usp40Q8BWR4 Thap2-202ENSMUST00000218842 4970 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Usp40Q8BWR4 Pax6-203ENSMUST00000111082 3116 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Usp40Q8BWR4 Oxa1l-201ENSMUST00000000985 2538 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Usp40Q8BWR4 Gm37644-201ENSMUST00000192190 2270 ntBASIC16.93■□□□□ 0.3
Usp40Q8BWR4 Uba3-201ENSMUST00000089287 2257 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
Usp40Q8BWR4 Dcaf4-201ENSMUST00000021645 2008 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
Usp40Q8BWR4 Gnas-204ENSMUST00000087877 3947 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Usp40Q8BWR4 Slc19a2-202ENSMUST00000159230 3432 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Usp40Q8BWR4 Pcgf2-203ENSMUST00000103149 817 ntTSL 5 BASIC16.93■□□□□ 0.3
Usp40Q8BWR4 Gm11511-201ENSMUST00000118146 540 ntBASIC16.93■□□□□ 0.3
Usp40Q8BWR4 Gm13408-201ENSMUST00000119822 798 ntBASIC16.93■□□□□ 0.3
Usp40Q8BWR4 Gm13935-201ENSMUST00000121859 798 ntBASIC16.93■□□□□ 0.3
Usp40Q8BWR4 Gm13391-202ENSMUST00000147685 816 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Usp40Q8BWR4 Snrpa-206ENSMUST00000163311 1288 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
Usp40Q8BWR4 Trmt112-204ENSMUST00000174786 646 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Usp40Q8BWR4 Rpl41-203ENSMUST00000176683 437 ntAPPRIS P2 TSL 2 BASIC16.93■□□□□ 0.3
Usp40Q8BWR4 Lsm10-203ENSMUST00000179323 808 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
Usp40Q8BWR4 4833445I07Rik-202ENSMUST00000194104 579 ntTSL 3 BASIC16.93■□□□□ 0.3
Usp40Q8BWR4 Gm44882-201ENSMUST00000205702 802 ntBASIC16.93■□□□□ 0.3
Usp40Q8BWR4 Gm4157-201ENSMUST00000211647 679 ntBASIC16.93■□□□□ 0.3
Usp40Q8BWR4 Ankrd7-201ENSMUST00000031489 1190 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Usp40Q8BWR4 Lcn8-201ENSMUST00000038482 651 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Usp40Q8BWR4 1110025L11Rik-201ENSMUST00000089104 591 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
Usp40Q8BWR4 Rita1-207ENSMUST00000177800 1668 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
Usp40Q8BWR4 Kalrn-209ENSMUST00000114963 3207 ntTSL 5 BASIC16.93■□□□□ 0.3
Usp40Q8BWR4 Cpsf7-201ENSMUST00000038379 3604 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Usp40Q8BWR4 Gm43154-214ENSMUST00000211225 1420 ntTSL 5 BASIC16.93■□□□□ 0.3
Usp40Q8BWR4 Aspg-201ENSMUST00000079400 2722 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Usp40Q8BWR4 Chtop-205ENSMUST00000107343 3118 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Usp40Q8BWR4 Ddx10-201ENSMUST00000065630 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Usp40Q8BWR4 Map10-201ENSMUST00000053078 3542 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
Usp40Q8BWR4 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Usp40Q8BWR4 Pcp4l1-201ENSMUST00000111332 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Usp40Q8BWR4 Ripk3-202ENSMUST00000168716 1964 ntTSL 5 BASIC16.93■□□□□ 0.3
Usp40Q8BWR4 Cdkl2-204ENSMUST00000113143 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Usp40Q8BWR4 Aspm-205ENSMUST00000200083 6072 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Usp40Q8BWR4 Fam114a2-201ENSMUST00000020831 2557 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Usp40Q8BWR4 Nphp4-202ENSMUST00000081393 5027 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Usp40Q8BWR4 Chfr-201ENSMUST00000014812 3146 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Usp40Q8BWR4 Ddx19b-202ENSMUST00000065784 3104 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Usp40Q8BWR4 Dpysl4-202ENSMUST00000121184 2727 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Usp40Q8BWR4 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Usp40Q8BWR4 Sec62-201ENSMUST00000029256 3967 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Usp40Q8BWR4 Cct6a-202ENSMUST00000201414 2454 ntTSL 5 BASIC16.92■□□□□ 0.3
Usp40Q8BWR4 Celf4-207ENSMUST00000225477 2626 ntAPPRIS P3 BASIC16.92■□□□□ 0.3
Usp40Q8BWR4 Gm9072-201ENSMUST00000218390 1514 ntBASIC16.92■□□□□ 0.3
Usp40Q8BWR4 Hps3-202ENSMUST00000108321 3385 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Usp40Q8BWR4 Gm23912-201ENSMUST00000104687 87 ntBASIC16.92■□□□□ 0.3
Usp40Q8BWR4 Gm2420-201ENSMUST00000119864 2149 ntBASIC16.92■□□□□ 0.3
Usp40Q8BWR4 Gm14247-201ENSMUST00000120950 237 ntBASIC16.92■□□□□ 0.3
Usp40Q8BWR4 Gm9550-201ENSMUST00000161130 862 ntBASIC16.92■□□□□ 0.3
Usp40Q8BWR4 Gm8343-201ENSMUST00000182705 994 ntBASIC16.92■□□□□ 0.3
Usp40Q8BWR4 Nkx2-2os-202ENSMUST00000184407 458 ntBASIC16.92■□□□□ 0.3
Usp40Q8BWR4 Smim22-207ENSMUST00000184439 382 ntAPPRIS P3 TSL 2 BASIC16.92■□□□□ 0.3
Usp40Q8BWR4 Gm44934-201ENSMUST00000208941 238 ntTSL 5 BASIC16.92■□□□□ 0.3
Usp40Q8BWR4 Gm29787-201ENSMUST00000222129 849 ntBASIC16.92■□□□□ 0.3
Usp40Q8BWR4 Prss52-201ENSMUST00000022537 1064 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Usp40Q8BWR4 CT009713.8-201ENSMUST00000225448 560 ntBASIC16.92■□□□□ 0.3
Usp40Q8BWR4 Adcyap1r1-202ENSMUST00000070756 6107 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Usp40Q8BWR4 Cd79b-201ENSMUST00000044228 1431 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Usp40Q8BWR4 Kcnma1-214ENSMUST00000190044 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Usp40Q8BWR4 St13-205ENSMUST00000172107 3346 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Usp40Q8BWR4 Trmt1-204ENSMUST00000109768 2044 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Usp40Q8BWR4 Tsku-207ENSMUST00000206414 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Usp40Q8BWR4 Slc8a2-202ENSMUST00000211649 5261 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Usp40Q8BWR4 Zp3-201ENSMUST00000005073 1323 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Usp40Q8BWR4 Gm11924-201ENSMUST00000152306 1750 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Usp40Q8BWR4 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
Usp40Q8BWR4 Rbm33-202ENSMUST00000059644 9510 ntAPPRIS P2 TSL 5 BASIC16.92■□□□□ 0.3
Usp40Q8BWR4 Eif3j1-201ENSMUST00000028668 5413 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Usp40Q8BWR4 Zbtb44-205ENSMUST00000216649 3157 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Usp40Q8BWR4 Prkce-201ENSMUST00000097274 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Usp40Q8BWR4 Trmt1-203ENSMUST00000109767 2138 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
Usp40Q8BWR4 Vldlr-207ENSMUST00000167487 7971 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
Usp40Q8BWR4 Heg1-205ENSMUST00000152782 8161 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Usp40Q8BWR4 Gjc1-202ENSMUST00000092567 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Usp40Q8BWR4 Yeats2-201ENSMUST00000090052 5997 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
Usp40Q8BWR4 Fam49b-201ENSMUST00000063838 3797 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Usp40Q8BWR4 Nsmce2-202ENSMUST00000168722 2679 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Usp40Q8BWR4 Casc4-202ENSMUST00000089912 3602 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Usp40Q8BWR4 Spock3-201ENSMUST00000093480 3024 ntAPPRIS P3 TSL 5 BASIC16.91■□□□□ 0.3
Usp40Q8BWR4 Tnnt3-206ENSMUST00000105944 753 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Usp40Q8BWR4 Tnnt3-210ENSMUST00000105948 753 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Usp40Q8BWR4 Tnnt3-212ENSMUST00000105950 1037 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Usp40Q8BWR4 Timm10b-204ENSMUST00000106784 494 ntTSL 3 BASIC16.91■□□□□ 0.3
Usp40Q8BWR4 Cd63-ps-202ENSMUST00000154992 717 ntBASIC16.91■□□□□ 0.3
Usp40Q8BWR4 Tnnt3-224ENSMUST00000169299 1013 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Usp40Q8BWR4 Tnnt3-226ENSMUST00000180152 1067 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Usp40Q8BWR4 Gm44711-201ENSMUST00000205414 1264 ntBASIC16.91■□□□□ 0.3
Usp40Q8BWR4 Gm45770-201ENSMUST00000212105 616 ntBASIC16.91■□□□□ 0.3
Usp40Q8BWR4 AC153830.1-201ENSMUST00000218522 594 ntTSL 5 BASIC16.91■□□□□ 0.3
Usp40Q8BWR4 Rbp2-201ENSMUST00000035029 672 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Usp40Q8BWR4 Lce3d-201ENSMUST00000059053 491 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 71.4 ms