Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Gm15979-201ENSMUST00000149741 590 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Trim56Q80VI1 Erdr1-201ENSMUST00000177591 774 ntAPPRIS P5 TSL 5 BASIC14.6□□□□□ -0.07
Trim56Q80VI1 Gm8856-201ENSMUST00000185254 1144 ntBASIC14.6□□□□□ -0.07
Trim56Q80VI1 Gm43050-201ENSMUST00000201062 338 ntTSL 2 BASIC14.6□□□□□ -0.07
Trim56Q80VI1 Gm18056-201ENSMUST00000207670 568 ntBASIC14.6□□□□□ -0.07
Trim56Q80VI1 Gm18061-201ENSMUST00000208350 562 ntBASIC14.6□□□□□ -0.07
Trim56Q80VI1 Gm18063-201ENSMUST00000208529 568 ntBASIC14.6□□□□□ -0.07
Trim56Q80VI1 Gm18052-201ENSMUST00000208750 559 ntBASIC14.6□□□□□ -0.07
Trim56Q80VI1 Gm7619-201ENSMUST00000210649 1282 ntBASIC14.6□□□□□ -0.07
Trim56Q80VI1 Gm3898-202ENSMUST00000216905 328 ntTSL 2 BASIC14.6□□□□□ -0.07
Trim56Q80VI1 Nmnat1-201ENSMUST00000030845 1238 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Trim56Q80VI1 Olfr156-202ENSMUST00000079465 1099 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
Trim56Q80VI1 Klk1b27-201ENSMUST00000079859 889 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Trim56Q80VI1 Ccdc28a-202ENSMUST00000080860 1190 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Trim56Q80VI1 Gm12166-201ENSMUST00000093169 958 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
Trim56Q80VI1 Gm37513-201ENSMUST00000194830 2268 ntBASIC14.6□□□□□ -0.07
Trim56Q80VI1 Gm38378-201ENSMUST00000195153 2268 ntBASIC14.6□□□□□ -0.07
Trim56Q80VI1 Pgm3-201ENSMUST00000070064 2666 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Trim56Q80VI1 Gpr85-201ENSMUST00000060442 3661 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Trim56Q80VI1 Arhgef2-201ENSMUST00000029694 4300 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
Trim56Q80VI1 Mapk8-204ENSMUST00000111944 1528 ntAPPRIS ALT1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Trim56Q80VI1 Tsn-201ENSMUST00000027623 7063 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Trim56Q80VI1 Tgm1-201ENSMUST00000002389 2791 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Trim56Q80VI1 Cit-203ENSMUST00000112008 6087 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
Trim56Q80VI1 Dph6-201ENSMUST00000028640 2632 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Trim56Q80VI1 Pogk-202ENSMUST00000128861 4848 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
Trim56Q80VI1 Npnt-203ENSMUST00000093971 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Trim56Q80VI1 Ndel1-202ENSMUST00000101017 1646 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Trim56Q80VI1 Kif5c-201ENSMUST00000028102 6856 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Trim56Q80VI1 Prc1-211ENSMUST00000174199 2128 ntTSL 5 BASIC14.59□□□□□ -0.07
Trim56Q80VI1 Brd2-201ENSMUST00000025193 4374 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Trim56Q80VI1 Wnt16-202ENSMUST00000128245 3285 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Trim56Q80VI1 Ttc23-202ENSMUST00000107470 1915 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
Trim56Q80VI1 Epb41-208ENSMUST00000105981 5303 ntAPPRIS P3 TSL 5 BASIC14.59□□□□□ -0.07
Trim56Q80VI1 Gm43908-201ENSMUST00000205074 1472 ntBASIC14.59□□□□□ -0.07
Trim56Q80VI1 Rgs12-205ENSMUST00000114283 2628 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
Trim56Q80VI1 Epha5-204ENSMUST00000113401 5158 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Trim56Q80VI1 Syt12-201ENSMUST00000059295 3581 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Trim56Q80VI1 Rps6ka6-210ENSMUST00000137712 2410 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
Trim56Q80VI1 Rxfp3-201ENSMUST00000058007 4275 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
Trim56Q80VI1 H2-M6-ps-201ENSMUST00000119193 1034 ntBASIC14.59□□□□□ -0.07
Trim56Q80VI1 Gm12953-201ENSMUST00000138426 751 ntTSL 2 BASIC14.59□□□□□ -0.07
Trim56Q80VI1 C030017D09Rik-201ENSMUST00000163690 923 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Trim56Q80VI1 Gm4819-201ENSMUST00000182170 1009 ntBASIC14.59□□□□□ -0.07
Trim56Q80VI1 Ighv5-7-201ENSMUST00000192302 244 ntBASIC14.59□□□□□ -0.07
Trim56Q80VI1 Rprl1-202ENSMUST00000198476 238 ntBASIC14.59□□□□□ -0.07
Trim56Q80VI1 Rassf4-202ENSMUST00000203029 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Trim56Q80VI1 AC093022.1-201ENSMUST00000226949 1072 ntBASIC14.59□□□□□ -0.07
Trim56Q80VI1 Tmem14a-202ENSMUST00000027065 1168 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Trim56Q80VI1 Tmem206-201ENSMUST00000027940 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Trim56Q80VI1 Slc7a3-201ENSMUST00000073927 2232 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Trim56Q80VI1 Tmem132a-202ENSMUST00000120524 3895 ntTSL 5 BASIC14.59□□□□□ -0.07
Trim56Q80VI1 Acin1-221ENSMUST00000150371 2494 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Trim56Q80VI1 Nhs-202ENSMUST00000087085 8805 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Trim56Q80VI1 Ldb3-203ENSMUST00000022330 1586 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Trim56Q80VI1 Ncald-211ENSMUST00000168992 3538 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
Trim56Q80VI1 Cxcr5-204ENSMUST00000215293 2846 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Trim56Q80VI1 Ahdc1-204ENSMUST00000105916 6602 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
Trim56Q80VI1 Ttpa-203ENSMUST00000121491 2862 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Trim56Q80VI1 Mthfsd-210ENSMUST00000139782 1366 ntTSL 5 BASIC14.59□□□□□ -0.07
Trim56Q80VI1 Cnpy2-202ENSMUST00000219037 1383 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Trim56Q80VI1 Sec14l2-201ENSMUST00000003681 2631 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Trim56Q80VI1 Cacna2d1-205ENSMUST00000167946 7436 ntAPPRIS ALT1 TSL 5 BASIC14.59□□□□□ -0.07
Trim56Q80VI1 Tmem2-202ENSMUST00000096194 6667 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
Trim56Q80VI1 Sesn2-201ENSMUST00000030724 3475 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Trim56Q80VI1 Rnh1-202ENSMUST00000167493 1656 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.07
Trim56Q80VI1 Rnh1-204ENSMUST00000210314 1658 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.07
Trim56Q80VI1 Cdc7-201ENSMUST00000031221 2961 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.07
Trim56Q80VI1 Stpg3-201ENSMUST00000043774 1430 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.07
Trim56Q80VI1 Chd1-202ENSMUST00000024627 7916 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Trim56Q80VI1 Gpd2-201ENSMUST00000028167 5620 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Trim56Q80VI1 B230398E01Rik-201ENSMUST00000125186 1958 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
Trim56Q80VI1 Smarca1-205ENSMUST00000141084 1965 ntTSL 2 BASIC14.58□□□□□ -0.07
Trim56Q80VI1 Heg1-201ENSMUST00000126532 6714 ntAPPRIS P5 TSL 5 BASIC14.58□□□□□ -0.07
Trim56Q80VI1 Ush1c-209ENSMUST00000222454 2580 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
Trim56Q80VI1 CT009757.3-201ENSMUST00000223367 2320 ntBASIC14.58□□□□□ -0.08
Trim56Q80VI1 Lrrc18-204ENSMUST00000120951 1511 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
Trim56Q80VI1 Gm12130-201ENSMUST00000133599 639 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Trim56Q80VI1 Adtrp-204ENSMUST00000179758 1046 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
Trim56Q80VI1 1700020N18Rik-201ENSMUST00000188956 547 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Trim56Q80VI1 Gm9678-201ENSMUST00000198979 1149 ntBASIC14.58□□□□□ -0.08
Trim56Q80VI1 Gm45186-201ENSMUST00000206874 478 ntBASIC14.58□□□□□ -0.08
Trim56Q80VI1 Rassf5-205ENSMUST00000212202 958 ntTSL 5 BASIC14.58□□□□□ -0.08
Trim56Q80VI1 AC131777.1-201ENSMUST00000214749 387 ntTSL 3 BASIC14.58□□□□□ -0.08
Trim56Q80VI1 AC123665.1-201ENSMUST00000228204 438 ntBASIC14.58□□□□□ -0.08
Trim56Q80VI1 Nppc-201ENSMUST00000027449 1042 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Trim56Q80VI1 Ctnnb1-214ENSMUST00000178812 2702 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Trim56Q80VI1 Qpctl-201ENSMUST00000032566 2710 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Trim56Q80VI1 Bysl-201ENSMUST00000024783 3854 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Trim56Q80VI1 Celf2-225ENSMUST00000183091 2177 ntTSL 5 BASIC14.58□□□□□ -0.08
Trim56Q80VI1 Cacna1b-203ENSMUST00000100348 7182 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
Trim56Q80VI1 Gm12462-201ENSMUST00000140826 3056 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Trim56Q80VI1 Olfr1419-203ENSMUST00000217617 3087 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
Trim56Q80VI1 D930032P07Rik-201ENSMUST00000181393 1314 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Trim56Q80VI1 Stard5-202ENSMUST00000117410 2832 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Trim56Q80VI1 Akna-201ENSMUST00000035724 5387 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
Trim56Q80VI1 Hps1-209ENSMUST00000162061 2608 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Trim56Q80VI1 Senp3-201ENSMUST00000005336 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Trim56Q80VI1 Unc45a-201ENSMUST00000032748 3260 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Trim56Q80VI1 Pmp2-201ENSMUST00000029034 1408 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 34.6 ms