Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PCDHGA1Q9Y5H4 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
PCDHGA1Q9Y5H4 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
PCDHGA1Q9Y5H4 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PCDHGA1Q9Y5H4 AC018735.1-201ENST00000437208 1502 ntBASIC14.87□□□□□ -0.03
PCDHGA1Q9Y5H4 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC14.87□□□□□ -0.03
PCDHGA1Q9Y5H4 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PCDHGA1Q9Y5H4 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PCDHGA1Q9Y5H4 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC14.86□□□□□ -0.03
PCDHGA1Q9Y5H4 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
PCDHGA1Q9Y5H4 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PCDHGA1Q9Y5H4 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PCDHGA1Q9Y5H4 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
PCDHGA1Q9Y5H4 ACE-204ENST00000428043 5120 ntTSL 2 BASIC14.86□□□□□ -0.03
PCDHGA1Q9Y5H4 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PCDHGA1Q9Y5H4 FLJ38576-201ENST00000623820 2459 ntBASIC14.86□□□□□ -0.03
PCDHGA1Q9Y5H4 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC14.86□□□□□ -0.03
PCDHGA1Q9Y5H4 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PCDHGA1Q9Y5H4 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PCDHGA1Q9Y5H4 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
PCDHGA1Q9Y5H4 RPS15-201ENST00000233609 534 ntTSL 2 BASIC14.86□□□□□ -0.03
PCDHGA1Q9Y5H4 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC14.86□□□□□ -0.03
PCDHGA1Q9Y5H4 MIR769-201ENST00000390225 118 ntBASIC14.86□□□□□ -0.03
PCDHGA1Q9Y5H4 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PCDHGA1Q9Y5H4 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC14.86□□□□□ -0.03
PCDHGA1Q9Y5H4 MAGEA5-201ENST00000446757 942 ntBASIC14.86□□□□□ -0.03
PCDHGA1Q9Y5H4 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.03
PCDHGA1Q9Y5H4 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC14.86□□□□□ -0.03
PCDHGA1Q9Y5H4 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC14.86□□□□□ -0.03
PCDHGA1Q9Y5H4 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PCDHGA1Q9Y5H4 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC14.86□□□□□ -0.03
PCDHGA1Q9Y5H4 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC14.86□□□□□ -0.03
PCDHGA1Q9Y5H4 RPS15-205ENST00000586686 562 ntTSL 5 BASIC14.86□□□□□ -0.03
PCDHGA1Q9Y5H4 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC14.86□□□□□ -0.03
PCDHGA1Q9Y5H4 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC14.86□□□□□ -0.03
PCDHGA1Q9Y5H4 RPS15-208ENST00000591804 711 ntTSL 5 BASIC14.86□□□□□ -0.03
PCDHGA1Q9Y5H4 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
PCDHGA1Q9Y5H4 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
PCDHGA1Q9Y5H4 AL451050.2-201ENST00000606967 682 ntBASIC14.86□□□□□ -0.03
PCDHGA1Q9Y5H4 AC091812.3-201ENST00000621362 345 ntBASIC14.86□□□□□ -0.03
PCDHGA1Q9Y5H4 PRSS30P-206ENST00000641773 873 ntBASIC14.86□□□□□ -0.03
PCDHGA1Q9Y5H4 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PCDHGA1Q9Y5H4 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC14.86□□□□□ -0.03
PCDHGA1Q9Y5H4 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PCDHGA1Q9Y5H4 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
PCDHGA1Q9Y5H4 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC14.86□□□□□ -0.03
PCDHGA1Q9Y5H4 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
PCDHGA1Q9Y5H4 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PCDHGA1Q9Y5H4 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC14.86□□□□□ -0.03
PCDHGA1Q9Y5H4 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PCDHGA1Q9Y5H4 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PCDHGA1Q9Y5H4 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC14.86□□□□□ -0.03
PCDHGA1Q9Y5H4 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PCDHGA1Q9Y5H4 AC092850.2-201ENST00000623821 2697 ntBASIC14.86□□□□□ -0.03
PCDHGA1Q9Y5H4 AL023775.1-201ENST00000454907 1746 ntBASIC14.86□□□□□ -0.03
PCDHGA1Q9Y5H4 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
PCDHGA1Q9Y5H4 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 RNU1-114P-201ENST00000365297 166 ntBASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 MIR648-201ENST00000385046 94 ntBASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 AL645937.2-201ENST00000396808 931 ntBASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 FXNP2-201ENST00000411625 547 ntBASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 HINT2P1-201ENST00000419438 481 ntBASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 MPRIPP1-201ENST00000452433 1089 ntBASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 KLK11-210ENST00000600362 759 ntTSL 3 BASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 MIR6727-201ENST00000620702 65 ntBASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 CU633904.3-201ENST00000624042 1029 ntBASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms