Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Wapl-205ENSMUST00000169910 4066 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Clp1Q99LI9 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Clp1Q99LI9 Adamtsl4-202ENSMUST00000117782 4036 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Clp1Q99LI9 Strip1-201ENSMUST00000064759 3215 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Clp1Q99LI9 Gm45278-201ENSMUST00000209650 2414 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Clp1Q99LI9 Sufu-203ENSMUST00000118440 2663 ntTSL 5 BASIC13.11□□□□□ -0.31
Clp1Q99LI9 Cpeb3-204ENSMUST00000126188 4224 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Clp1Q99LI9 Gm9924-202ENSMUST00000192760 2311 ntBASIC13.11□□□□□ -0.31
Clp1Q99LI9 Gm14150-201ENSMUST00000122404 1354 ntBASIC13.11□□□□□ -0.31
Clp1Q99LI9 Rnf113a2-201ENSMUST00000183146 1383 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
Clp1Q99LI9 AC091458.1-201ENSMUST00000220902 1361 ntBASIC13.11□□□□□ -0.31
Clp1Q99LI9 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Clp1Q99LI9 Trim32-202ENSMUST00000107366 3191 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Clp1Q99LI9 Zfp207-201ENSMUST00000017567 2245 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Clp1Q99LI9 Arfgap1-204ENSMUST00000108861 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Clp1Q99LI9 Ifna15-201ENSMUST00000102809 573 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
Clp1Q99LI9 Eif5a-206ENSMUST00000108609 849 ntAPPRIS P1 TSL 3 BASIC13.11□□□□□ -0.31
Clp1Q99LI9 Gm11511-201ENSMUST00000118146 540 ntBASIC13.11□□□□□ -0.31
Clp1Q99LI9 Gm13257-201ENSMUST00000132840 665 ntTSL 3 BASIC13.11□□□□□ -0.31
Clp1Q99LI9 4930538E20Rik-202ENSMUST00000146717 497 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Clp1Q99LI9 Retn-202ENSMUST00000169234 1139 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
Clp1Q99LI9 Gm20535-201ENSMUST00000173157 1268 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Clp1Q99LI9 Gm42626-201ENSMUST00000196866 1148 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Clp1Q99LI9 Gm43156-201ENSMUST00000202338 2127 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Clp1Q99LI9 Gm19287-201ENSMUST00000203190 358 ntBASIC13.11□□□□□ -0.31
Clp1Q99LI9 Cbx3-ps8-201ENSMUST00000214564 548 ntBASIC13.11□□□□□ -0.31
Clp1Q99LI9 Tff1-201ENSMUST00000024831 478 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Clp1Q99LI9 Emp3-201ENSMUST00000038876 736 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Clp1Q99LI9 Rdh16f2-201ENSMUST00000092058 1265 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Clp1Q99LI9 Abo-201ENSMUST00000102900 1779 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Clp1Q99LI9 Cflar-202ENSMUST00000097722 1771 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
Clp1Q99LI9 Enc1-201ENSMUST00000041623 4737 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Clp1Q99LI9 Mlxip-201ENSMUST00000068237 7303 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Clp1Q99LI9 Pxylp1-203ENSMUST00000119141 2768 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Clp1Q99LI9 Sox11-201ENSMUST00000079063 8311 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
Clp1Q99LI9 Edrf1-201ENSMUST00000051169 5424 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Clp1Q99LI9 Traf1-202ENSMUST00000113064 2325 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Clp1Q99LI9 Zbtb39-201ENSMUST00000054287 5960 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Clp1Q99LI9 Ccndbp1-201ENSMUST00000060455 1569 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Clp1Q99LI9 Gm9387-201ENSMUST00000098624 1320 ntBASIC13.11□□□□□ -0.31
Clp1Q99LI9 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
Clp1Q99LI9 Slc11a2-201ENSMUST00000023774 3025 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Clp1Q99LI9 Pfkfb3-204ENSMUST00000114844 2107 ntTSL 5 BASIC13.1□□□□□ -0.31
Clp1Q99LI9 Add2-208ENSMUST00000203786 2289 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Clp1Q99LI9 Mdga2-201ENSMUST00000037181 9833 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Clp1Q99LI9 Ube3a-216ENSMUST00000202945 3889 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Clp1Q99LI9 Cd207-201ENSMUST00000037882 1522 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Clp1Q99LI9 Hnrnpf-210ENSMUST00000180341 1922 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
Clp1Q99LI9 Zbtb45-202ENSMUST00000172240 2722 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Clp1Q99LI9 Krt26-201ENSMUST00000100482 2471 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Clp1Q99LI9 Ighv8-9-201ENSMUST00000103533 301 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
Clp1Q99LI9 Ighv8-13-201ENSMUST00000103542 303 ntAPPRIS ALT2 BASIC13.1□□□□□ -0.31
Clp1Q99LI9 Tsc22d4-204ENSMUST00000110983 1043 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Clp1Q99LI9 Selenot-ps-201ENSMUST00000119098 593 ntBASIC13.1□□□□□ -0.31
Clp1Q99LI9 Eef1akmt2-202ENSMUST00000120425 573 ntTSL 3 BASIC13.1□□□□□ -0.31
Clp1Q99LI9 Timm22-202ENSMUST00000120699 746 ntTSL 3 BASIC13.1□□□□□ -0.31
Clp1Q99LI9 Gm15906-201ENSMUST00000124746 323 ntTSL 5 BASIC13.1□□□□□ -0.31
Clp1Q99LI9 Gm11379-201ENSMUST00000154678 381 ntTSL 3 BASIC13.1□□□□□ -0.31
Clp1Q99LI9 Gm9358-201ENSMUST00000183067 927 ntBASIC13.1□□□□□ -0.31
Clp1Q99LI9 Gm28516-201ENSMUST00000190257 663 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Clp1Q99LI9 Gm37695-201ENSMUST00000191765 530 ntTSL 5 BASIC13.1□□□□□ -0.31
Clp1Q99LI9 Gm42629-201ENSMUST00000199063 1102 ntBASIC13.1□□□□□ -0.31
Clp1Q99LI9 Gm17831-201ENSMUST00000205579 900 ntBASIC13.1□□□□□ -0.31
Clp1Q99LI9 Gm4607-201ENSMUST00000206649 577 ntBASIC13.1□□□□□ -0.31
Clp1Q99LI9 Gm44710-201ENSMUST00000208885 471 ntTSL 2 BASIC13.1□□□□□ -0.31
Clp1Q99LI9 Gm9132-201ENSMUST00000210182 832 ntBASIC13.1□□□□□ -0.31
Clp1Q99LI9 Hrc-202ENSMUST00000211327 607 ntTSL 5 BASIC13.1□□□□□ -0.31
Clp1Q99LI9 AC151275.1-201ENSMUST00000224870 585 ntBASIC13.1□□□□□ -0.31
Clp1Q99LI9 CT030637.1-201ENSMUST00000228016 669 ntBASIC13.1□□□□□ -0.31
Clp1Q99LI9 Mcpt1-201ENSMUST00000022836 1014 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Clp1Q99LI9 Cldn17-201ENSMUST00000069549 1172 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
Clp1Q99LI9 Gm11190-201ENSMUST00000132487 3414 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Clp1Q99LI9 Sbk1-201ENSMUST00000056028 4109 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Clp1Q99LI9 Ntn4-201ENSMUST00000020204 3646 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Clp1Q99LI9 Wdr45-204ENSMUST00000115689 1568 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Clp1Q99LI9 Rubcn-203ENSMUST00000115105 5255 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
Clp1Q99LI9 Efhc1-201ENSMUST00000038447 2146 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Clp1Q99LI9 Egr3-204ENSMUST00000225200 3940 ntAPPRIS P2 BASIC13.1□□□□□ -0.31
Clp1Q99LI9 Necab1-201ENSMUST00000041606 4922 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Clp1Q99LI9 Zfp467-203ENSMUST00000114558 3115 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Clp1Q99LI9 Psd2-206ENSMUST00000177432 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Clp1Q99LI9 Gm16364-201ENSMUST00000153722 1313 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Clp1Q99LI9 Renbp-209ENSMUST00000155597 1310 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
Clp1Q99LI9 Platr7-201ENSMUST00000181466 1334 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Clp1Q99LI9 Gm26577-201ENSMUST00000180680 2184 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Clp1Q99LI9 Gm43721-201ENSMUST00000199677 2313 ntBASIC13.1□□□□□ -0.31
Clp1Q99LI9 1700065D16Rik-205ENSMUST00000190890 2903 ntBASIC13.09□□□□□ -0.31
Clp1Q99LI9 Mat2b-202ENSMUST00000101347 2053 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Clp1Q99LI9 Flt3-201ENSMUST00000049324 3657 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Clp1Q99LI9 Ranbp3-201ENSMUST00000002445 2511 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Clp1Q99LI9 1700003D09Rik-201ENSMUST00000141929 1389 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Clp1Q99LI9 Mfsd14b-201ENSMUST00000054730 3251 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
Clp1Q99LI9 Csrnp3-202ENSMUST00000112394 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Clp1Q99LI9 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Clp1Q99LI9 Ltbp2-203ENSMUST00000163189 6470 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Clp1Q99LI9 Otud4-203ENSMUST00000173286 7213 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Clp1Q99LI9 Gm12795-201ENSMUST00000117594 539 ntBASIC13.09□□□□□ -0.31
Clp1Q99LI9 Gm15573-201ENSMUST00000119487 540 ntBASIC13.09□□□□□ -0.31
Clp1Q99LI9 Rbm18-202ENSMUST00000122456 781 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Clp1Q99LI9 Gm11683-201ENSMUST00000147006 918 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 48.1 ms