Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trim40Q3UWA4 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trim40Q3UWA4 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trim40Q3UWA4 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trim40Q3UWA4 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
Trim40Q3UWA4 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trim40Q3UWA4 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trim40Q3UWA4 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC19.55■□□□□ 0.72
Trim40Q3UWA4 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trim40Q3UWA4 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trim40Q3UWA4 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
Trim40Q3UWA4 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trim40Q3UWA4 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trim40Q3UWA4 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trim40Q3UWA4 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Trim40Q3UWA4 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trim40Q3UWA4 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC19.54■□□□□ 0.72
Trim40Q3UWA4 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trim40Q3UWA4 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Trim40Q3UWA4 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
Trim40Q3UWA4 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC19.53■□□□□ 0.72
Trim40Q3UWA4 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
Trim40Q3UWA4 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC19.53■□□□□ 0.72
Trim40Q3UWA4 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trim40Q3UWA4 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trim40Q3UWA4 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC19.53■□□□□ 0.72
Trim40Q3UWA4 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
Trim40Q3UWA4 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC19.52■□□□□ 0.72
Trim40Q3UWA4 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Trim40Q3UWA4 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Trim40Q3UWA4 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Trim40Q3UWA4 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Trim40Q3UWA4 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.71
Trim40Q3UWA4 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
Trim40Q3UWA4 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Trim40Q3UWA4 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trim40Q3UWA4 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
Trim40Q3UWA4 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trim40Q3UWA4 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trim40Q3UWA4 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trim40Q3UWA4 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trim40Q3UWA4 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC19.51■□□□□ 0.71
Trim40Q3UWA4 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trim40Q3UWA4 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trim40Q3UWA4 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
Trim40Q3UWA4 Golph3-202ENSMUST00000226517 2359 ntBASIC19.5■□□□□ 0.71
Trim40Q3UWA4 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trim40Q3UWA4 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trim40Q3UWA4 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trim40Q3UWA4 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC19.5■□□□□ 0.71
Trim40Q3UWA4 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Trim40Q3UWA4 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trim40Q3UWA4 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
Trim40Q3UWA4 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
Trim40Q3UWA4 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trim40Q3UWA4 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trim40Q3UWA4 AC164883.3-201ENSMUST00000227396 1774 ntBASIC19.49■□□□□ 0.71
Trim40Q3UWA4 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trim40Q3UWA4 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trim40Q3UWA4 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trim40Q3UWA4 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Trim40Q3UWA4 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Trim40Q3UWA4 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trim40Q3UWA4 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
Trim40Q3UWA4 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trim40Q3UWA4 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trim40Q3UWA4 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Trim40Q3UWA4 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim40Q3UWA4 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim40Q3UWA4 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim40Q3UWA4 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim40Q3UWA4 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim40Q3UWA4 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
Trim40Q3UWA4 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim40Q3UWA4 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC19.47■□□□□ 0.71
Trim40Q3UWA4 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Trim40Q3UWA4 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Trim40Q3UWA4 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
Trim40Q3UWA4 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim40Q3UWA4 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Trim40Q3UWA4 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trim40Q3UWA4 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trim40Q3UWA4 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trim40Q3UWA4 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Trim40Q3UWA4 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
Trim40Q3UWA4 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trim40Q3UWA4 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trim40Q3UWA4 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
Trim40Q3UWA4 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Trim40Q3UWA4 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trim40Q3UWA4 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Trim40Q3UWA4 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Trim40Q3UWA4 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trim40Q3UWA4 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Trim40Q3UWA4 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Trim40Q3UWA4 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
Trim40Q3UWA4 Gm44949-201ENSMUST00000206423 1450 ntBASIC19.45■□□□□ 0.7
Trim40Q3UWA4 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trim40Q3UWA4 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trim40Q3UWA4 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC19.44■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 20.1 ms