Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 AC140930.3-201ENSMUST00000222935 274 ntBASIC19.77■□□□□ 0.76
Msx1P13297 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Msx1P13297 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC19.77■□□□□ 0.76
Msx1P13297 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC19.77■□□□□ 0.76
Msx1P13297 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Msx1P13297 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC19.76■□□□□ 0.75
Msx1P13297 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC19.76■□□□□ 0.75
Msx1P13297 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Msx1P13297 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC19.76■□□□□ 0.75
Msx1P13297 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Msx1P13297 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Msx1P13297 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Msx1P13297 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC19.76■□□□□ 0.75
Msx1P13297 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Msx1P13297 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Msx1P13297 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Msx1P13297 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Msx1P13297 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
Msx1P13297 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC19.75■□□□□ 0.75
Msx1P13297 Nsd1-206ENSMUST00000224918 1001 ntBASIC19.75■□□□□ 0.75
Msx1P13297 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Msx1P13297 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC19.75■□□□□ 0.75
Msx1P13297 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Msx1P13297 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Msx1P13297 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
Msx1P13297 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Msx1P13297 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Msx1P13297 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Msx1P13297 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Msx1P13297 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Msx1P13297 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Msx1P13297 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC19.74■□□□□ 0.75
Msx1P13297 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Msx1P13297 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Msx1P13297 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC19.73■□□□□ 0.75
Msx1P13297 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Msx1P13297 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Msx1P13297 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Msx1P13297 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Msx1P13297 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Msx1P13297 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
Msx1P13297 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
Msx1P13297 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC19.72■□□□□ 0.75
Msx1P13297 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Msx1P13297 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
Msx1P13297 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Msx1P13297 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
Msx1P13297 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Msx1P13297 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC19.71■□□□□ 0.75
Msx1P13297 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Msx1P13297 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Msx1P13297 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
Msx1P13297 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC19.71■□□□□ 0.75
Msx1P13297 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Msx1P13297 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Msx1P13297 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Msx1P13297 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC19.7■□□□□ 0.74
Msx1P13297 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC19.7■□□□□ 0.74
Msx1P13297 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC19.7■□□□□ 0.74
Msx1P13297 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
Msx1P13297 Gm10399-202ENSMUST00000202768 748 ntBASIC19.7■□□□□ 0.74
Msx1P13297 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Msx1P13297 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Msx1P13297 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Msx1P13297 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
Msx1P13297 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC19.69■□□□□ 0.74
Msx1P13297 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Msx1P13297 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Msx1P13297 Gm27454-201ENSMUST00000185090 204 ntBASIC19.69■□□□□ 0.74
Msx1P13297 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Msx1P13297 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC19.69■□□□□ 0.74
Msx1P13297 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Msx1P13297 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Msx1P13297 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Msx1P13297 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Msx1P13297 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC19.68■□□□□ 0.74
Msx1P13297 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Msx1P13297 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Msx1P13297 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Msx1P13297 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC19.68■□□□□ 0.74
Msx1P13297 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Msx1P13297 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Msx1P13297 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC19.68■□□□□ 0.74
Msx1P13297 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Msx1P13297 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Msx1P13297 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC19.67■□□□□ 0.74
Msx1P13297 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Msx1P13297 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Msx1P13297 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Msx1P13297 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Msx1P13297 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Msx1P13297 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Msx1P13297 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Msx1P13297 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Msx1P13297 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Msx1P13297 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Msx1P13297 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC19.67■□□□□ 0.74
Msx1P13297 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Msx1P13297 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Msx1P13297 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC19.67■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 127.3 ms