Protein–RNA interactions for Protein: O88689

Pcdha4, Protocadherin alpha-4, mousemouse

Predictions only

Length 947 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha4O88689 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC23.48■■□□□ 1.35
Pcdha4O88689 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Pcdha4O88689 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
Pcdha4O88689 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC23.48■■□□□ 1.35
Pcdha4O88689 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Pcdha4O88689 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Pcdha4O88689 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC23.47■■□□□ 1.35
Pcdha4O88689 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Pcdha4O88689 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Pcdha4O88689 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Pcdha4O88689 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
Pcdha4O88689 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
Pcdha4O88689 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC23.46■■□□□ 1.35
Pcdha4O88689 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
Pcdha4O88689 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC23.46■■□□□ 1.35
Pcdha4O88689 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
Pcdha4O88689 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
Pcdha4O88689 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC23.45■■□□□ 1.34
Pcdha4O88689 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC23.45■■□□□ 1.34
Pcdha4O88689 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
Pcdha4O88689 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC23.45■■□□□ 1.34
Pcdha4O88689 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC23.44■■□□□ 1.34
Pcdha4O88689 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
Pcdha4O88689 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC23.44■■□□□ 1.34
Pcdha4O88689 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
Pcdha4O88689 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
Pcdha4O88689 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC23.43■■□□□ 1.34
Pcdha4O88689 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
Pcdha4O88689 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
Pcdha4O88689 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC23.43■■□□□ 1.34
Pcdha4O88689 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC23.43■■□□□ 1.34
Pcdha4O88689 Gm43403-201ENSMUST00000198011 1786 ntBASIC23.42■■□□□ 1.34
Pcdha4O88689 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Pcdha4O88689 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC23.42■■□□□ 1.34
Pcdha4O88689 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Pcdha4O88689 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Pcdha4O88689 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Pcdha4O88689 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
Pcdha4O88689 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
Pcdha4O88689 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC23.41■■□□□ 1.34
Pcdha4O88689 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
Pcdha4O88689 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
Pcdha4O88689 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC23.41■■□□□ 1.34
Pcdha4O88689 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
Pcdha4O88689 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC23.41■■□□□ 1.34
Pcdha4O88689 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC23.41■■□□□ 1.34
Pcdha4O88689 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
Pcdha4O88689 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
Pcdha4O88689 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
Pcdha4O88689 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
Pcdha4O88689 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC23.4■■□□□ 1.34
Pcdha4O88689 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC23.4■■□□□ 1.34
Pcdha4O88689 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC23.4■■□□□ 1.34
Pcdha4O88689 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
Pcdha4O88689 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
Pcdha4O88689 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC23.39■■□□□ 1.33
Pcdha4O88689 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC23.39■■□□□ 1.33
Pcdha4O88689 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
Pcdha4O88689 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
Pcdha4O88689 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
Pcdha4O88689 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC23.39■■□□□ 1.33
Pcdha4O88689 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Pcdha4O88689 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC23.38■■□□□ 1.33
Pcdha4O88689 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Pcdha4O88689 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
Pcdha4O88689 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
Pcdha4O88689 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
Pcdha4O88689 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Pcdha4O88689 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Pcdha4O88689 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC23.37■■□□□ 1.33
Pcdha4O88689 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC23.37■■□□□ 1.33
Pcdha4O88689 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
Pcdha4O88689 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
Pcdha4O88689 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC23.36■■□□□ 1.33
Pcdha4O88689 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Pcdha4O88689 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC23.36■■□□□ 1.33
Pcdha4O88689 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Pcdha4O88689 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Pcdha4O88689 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Pcdha4O88689 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Pcdha4O88689 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC23.35■■□□□ 1.33
Pcdha4O88689 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC23.35■■□□□ 1.33
Pcdha4O88689 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
Pcdha4O88689 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Pcdha4O88689 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Pcdha4O88689 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Pcdha4O88689 Dmtn-209ENSMUST00000228295 2572 ntBASIC23.34■■□□□ 1.33
Pcdha4O88689 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC23.33■■□□□ 1.33
Pcdha4O88689 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Pcdha4O88689 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Pcdha4O88689 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
Pcdha4O88689 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC23.33■■□□□ 1.33
Pcdha4O88689 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC23.33■■□□□ 1.33
Pcdha4O88689 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
Pcdha4O88689 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC23.33■■□□□ 1.32
Pcdha4O88689 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC23.32■■□□□ 1.32
Pcdha4O88689 Kdm3b-204ENSMUST00000224715 2032 ntBASIC23.32■■□□□ 1.32
Pcdha4O88689 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Pcdha4O88689 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Pcdha4O88689 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Retrieved 100 of 76,532 protein–RNA pairs in 22.2 ms