Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Asic3-202ENSMUST00000196296 1593 ntAPPRIS P1 TSL 5 BASIC10.66□□□□□ -0.7
Col8a1Q00780 Ppp2r5c-201ENSMUST00000084985 1847 ntAPPRIS P1 TSL 2 BASIC10.66□□□□□ -0.7
Col8a1Q00780 Sp6-202ENSMUST00000107622 3621 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Col8a1Q00780 Inpp5a-202ENSMUST00000097975 2301 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Col8a1Q00780 Pja1-201ENSMUST00000036354 2563 ntAPPRIS P4 TSL 1 (best) BASIC10.66□□□□□ -0.7
Col8a1Q00780 Slc38a7-204ENSMUST00000212270 3315 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Col8a1Q00780 Hopx-202ENSMUST00000113453 1113 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Col8a1Q00780 Rpl36-ps10-201ENSMUST00000117431 216 ntBASIC10.66□□□□□ -0.7
Col8a1Q00780 Crls1-204ENSMUST00000124836 1267 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Col8a1Q00780 2310057J18Rik-204ENSMUST00000152363 1043 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Col8a1Q00780 Ccdc127-205ENSMUST00000162672 677 ntTSL 3 BASIC10.66□□□□□ -0.7
Col8a1Q00780 Omt2a-203ENSMUST00000166056 1167 ntAPPRIS P4 TSL 1 (best) BASIC10.66□□□□□ -0.7
Col8a1Q00780 F12-202ENSMUST00000170921 478 ntTSL 3 BASIC10.66□□□□□ -0.7
Col8a1Q00780 Gm23363-201ENSMUST00000175024 79 ntBASIC10.66□□□□□ -0.7
Col8a1Q00780 Gm37905-201ENSMUST00000195310 341 ntBASIC10.66□□□□□ -0.7
Col8a1Q00780 D3Ertd751e-215ENSMUST00000195882 680 ntAPPRIS P3 TSL 2 BASIC10.66□□□□□ -0.7
Col8a1Q00780 4933421D24Rik-201ENSMUST00000209302 1286 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Col8a1Q00780 Mob2-203ENSMUST00000209732 977 ntAPPRIS ALT2 TSL 3 BASIC10.66□□□□□ -0.7
Col8a1Q00780 Snu13-202ENSMUST00000080622 1283 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Col8a1Q00780 Engase-202ENSMUST00000135383 4064 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Col8a1Q00780 Stox2-209ENSMUST00000211882 9696 ntTSL 5 BASIC10.66□□□□□ -0.7
Col8a1Q00780 Eif2ak1-201ENSMUST00000100487 4325 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Col8a1Q00780 Usp18-201ENSMUST00000032198 1771 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Col8a1Q00780 Creb3l2-201ENSMUST00000041093 7082 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Col8a1Q00780 Scn5a-201ENSMUST00000065196 8287 ntAPPRIS ALT1 TSL 5 BASIC10.66□□□□□ -0.7
Col8a1Q00780 Igfn1-203ENSMUST00000166193 8989 ntAPPRIS P2 TSL 1 (best) BASIC10.66□□□□□ -0.7
Col8a1Q00780 Lgals12-203ENSMUST00000159983 2470 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Col8a1Q00780 Pbx2-203ENSMUST00000173328 1990 ntTSL 2 BASIC10.66□□□□□ -0.7
Col8a1Q00780 Coq4-201ENSMUST00000028137 1991 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Col8a1Q00780 Trp63-204ENSMUST00000115305 1729 ntAPPRIS ALT1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Col8a1Q00780 Paqr8-202ENSMUST00000167119 1472 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Col8a1Q00780 Samd11-202ENSMUST00000217934 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
Col8a1Q00780 Sipa1-201ENSMUST00000071857 3868 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Col8a1Q00780 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC10.66□□□□□ -0.7
Col8a1Q00780 Odf2-208ENSMUST00000113763 2364 ntAPPRIS P3 TSL 5 BASIC10.66□□□□□ -0.7
Col8a1Q00780 Adsl-206ENSMUST00000168756 1439 ntTSL 5 BASIC10.66□□□□□ -0.7
Col8a1Q00780 Kcnk16-202ENSMUST00000225596 2127 ntBASIC10.66□□□□□ -0.7
Col8a1Q00780 Cd34-202ENSMUST00000110815 2554 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Col8a1Q00780 AC159308.2-201ENSMUST00000213592 2325 ntBASIC10.66□□□□□ -0.7
Col8a1Q00780 Slc41a3-201ENSMUST00000032177 2324 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Col8a1Q00780 Gm17189-201ENSMUST00000163707 1630 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Col8a1Q00780 Fn1-216ENSMUST00000189821 7410 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
Col8a1Q00780 Sipa1l2-204ENSMUST00000212987 6690 ntAPPRIS P2 TSL 5 BASIC10.65□□□□□ -0.7
Col8a1Q00780 Grk6-205ENSMUST00000224653 2976 ntBASIC10.65□□□□□ -0.7
Col8a1Q00780 Plch2-206ENSMUST00000135665 4349 ntAPPRIS ALT2 TSL 5 BASIC10.65□□□□□ -0.7
Col8a1Q00780 Casc4-202ENSMUST00000089912 3602 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
Col8a1Q00780 Kcnt1-201ENSMUST00000037580 5881 ntAPPRIS P3 TSL 1 (best) BASIC10.65□□□□□ -0.7
Col8a1Q00780 Kcnab2-203ENSMUST00000159186 1552 ntTSL 5 BASIC10.65□□□□□ -0.7
Col8a1Q00780 Eif1ad-201ENSMUST00000025759 2469 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Col8a1Q00780 Mfsd4a-204ENSMUST00000126927 2422 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
Col8a1Q00780 Gm15889-202ENSMUST00000212669 2443 ntBASIC10.65□□□□□ -0.7
Col8a1Q00780 Pygo1-201ENSMUST00000038489 7916 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Col8a1Q00780 Bscl2-210ENSMUST00000171649 1962 ntAPPRIS P3 TSL 1 (best) BASIC10.65□□□□□ -0.7
Col8a1Q00780 Tspan12-202ENSMUST00000120965 2157 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
Col8a1Q00780 Gpsm2-201ENSMUST00000029482 3498 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Col8a1Q00780 Acin1-216ENSMUST00000141453 2381 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
Col8a1Q00780 0610040F04Rik-201ENSMUST00000137478 1734 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
Col8a1Q00780 Tnk2-201ENSMUST00000115120 2794 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
Col8a1Q00780 Rpn2-202ENSMUST00000116380 2756 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Col8a1Q00780 Tnfrsf21-201ENSMUST00000024708 3626 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Col8a1Q00780 Rad54b-203ENSMUST00000108306 652 ntTSL 3 BASIC10.65□□□□□ -0.7
Col8a1Q00780 Yipf6-202ENSMUST00000113811 930 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Col8a1Q00780 Gm12015-201ENSMUST00000117065 843 ntBASIC10.65□□□□□ -0.7
Col8a1Q00780 Gm13035-201ENSMUST00000117496 342 ntBASIC10.65□□□□□ -0.7
Col8a1Q00780 B230119M05Rik-201ENSMUST00000154072 979 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
Col8a1Q00780 Hsh2d-202ENSMUST00000165324 1238 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Col8a1Q00780 Smpd4-223ENSMUST00000172182 516 ntTSL 3 BASIC10.65□□□□□ -0.7
Col8a1Q00780 Tlx1-202ENSMUST00000174617 806 ntTSL 5 BASIC10.65□□□□□ -0.7
Col8a1Q00780 Gm25072-201ENSMUST00000175233 235 ntBASIC10.65□□□□□ -0.7
Col8a1Q00780 Gm8492-201ENSMUST00000182375 987 ntBASIC10.65□□□□□ -0.7
Col8a1Q00780 Gm9061-201ENSMUST00000182707 1006 ntBASIC10.65□□□□□ -0.7
Col8a1Q00780 Gm34023-201ENSMUST00000195539 217 ntBASIC10.65□□□□□ -0.7
Col8a1Q00780 Gm43156-201ENSMUST00000202338 2127 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
Col8a1Q00780 Calca-205ENSMUST00000205933 458 ntTSL 3 BASIC10.65□□□□□ -0.7
Col8a1Q00780 Gm26953-204ENSMUST00000212526 553 ntTSL 5 BASIC10.65□□□□□ -0.7
Col8a1Q00780 AC159205.5-202ENSMUST00000224849 386 ntBASIC10.65□□□□□ -0.7
Col8a1Q00780 Lcn8-201ENSMUST00000038482 651 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Col8a1Q00780 Bcdin3d-201ENSMUST00000040313 1271 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Col8a1Q00780 Phrf1-202ENSMUST00000122143 4864 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
Col8a1Q00780 Olfr533-203ENSMUST00000215308 2345 ntAPPRIS P1 TSL 5 BASIC10.65□□□□□ -0.7
Col8a1Q00780 Cacna1g-205ENSMUST00000107786 7984 ntAPPRIS ALT2 TSL 1 (best) BASIC10.65□□□□□ -0.7
Col8a1Q00780 Arhgef39-201ENSMUST00000054538 1659 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Col8a1Q00780 Nek7-201ENSMUST00000027642 3737 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
Col8a1Q00780 Dpm2-203ENSMUST00000140592 1412 ntTSL 5 BASIC10.65□□□□□ -0.7
Col8a1Q00780 Awat2-201ENSMUST00000033567 1619 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Col8a1Q00780 Cabp7-201ENSMUST00000009219 2628 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.71
Col8a1Q00780 Bhlhb9-204ENSMUST00000180025 2812 ntAPPRIS P1 TSL 2 BASIC10.65□□□□□ -0.71
Col8a1Q00780 Ctbp1-212ENSMUST00000202962 3595 ntTSL 2 BASIC10.65□□□□□ -0.71
Col8a1Q00780 Fam114a2-201ENSMUST00000020831 2557 ntAPPRIS P3 TSL 1 (best) BASIC10.65□□□□□ -0.71
Col8a1Q00780 Tmem30c-202ENSMUST00000119407 1396 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.71
Col8a1Q00780 Chrnd-202ENSMUST00000186373 2949 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Col8a1Q00780 Wdr5-201ENSMUST00000113952 2890 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Col8a1Q00780 Hoxd3os1-202ENSMUST00000139005 1701 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Col8a1Q00780 Zfp354c-202ENSMUST00000109135 5325 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Col8a1Q00780 Fam170a-201ENSMUST00000039121 1342 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Col8a1Q00780 Spock3-201ENSMUST00000093480 3024 ntAPPRIS P3 TSL 5 BASIC10.64□□□□□ -0.71
Col8a1Q00780 Ncapd3-201ENSMUST00000073127 5499 ntAPPRIS P2 TSL 5 BASIC10.64□□□□□ -0.71
Col8a1Q00780 Shisa9-201ENSMUST00000023138 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC10.64□□□□□ -0.71
Col8a1Q00780 Gpd2-201ENSMUST00000028167 5620 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Col8a1Q00780 Pkp1-201ENSMUST00000027667 4669 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Retrieved 100 of 76,532 protein–RNA pairs in 51.1 ms