Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col18a1P39061 Ctnnb1-214ENSMUST00000178812 2702 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col18a1P39061 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col18a1P39061 Slc1a2-203ENSMUST00000111212 1957 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Col18a1P39061 Six3os1-211ENSMUST00000176958 2889 ntTSL 2 BASIC16.14■□□□□ 0.17
Col18a1P39061 Gm6189-201ENSMUST00000164487 2082 ntBASIC16.14■□□□□ 0.17
Col18a1P39061 Podn-202ENSMUST00000106708 2947 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col18a1P39061 Gm11996-201ENSMUST00000117538 915 ntBASIC16.14■□□□□ 0.17
Col18a1P39061 Gm12036-201ENSMUST00000120008 530 ntBASIC16.14■□□□□ 0.17
Col18a1P39061 Mir1905-201ENSMUST00000122779 82 ntBASIC16.14■□□□□ 0.17
Col18a1P39061 Gm16538-201ENSMUST00000162407 442 ntTSL 2 BASIC16.14■□□□□ 0.17
Col18a1P39061 Gm9866-204ENSMUST00000183238 351 ntTSL 5 BASIC16.14■□□□□ 0.17
Col18a1P39061 Ighv1-2-201ENSMUST00000195325 378 ntBASIC16.14■□□□□ 0.17
Col18a1P39061 Gm37197-201ENSMUST00000195607 401 ntBASIC16.14■□□□□ 0.17
Col18a1P39061 Gm2448-201ENSMUST00000207080 559 ntBASIC16.14■□□□□ 0.17
Col18a1P39061 Gm6331-201ENSMUST00000217890 450 ntBASIC16.14■□□□□ 0.17
Col18a1P39061 Tprg-201ENSMUST00000056087 1084 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col18a1P39061 Ensa-202ENSMUST00000058230 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col18a1P39061 Olfr314-201ENSMUST00000076393 1131 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
Col18a1P39061 Cd80-201ENSMUST00000099816 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col18a1P39061 Fmnl2-205ENSMUST00000155586 3939 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Col18a1P39061 Gm3052-202ENSMUST00000188254 2224 ntBASIC16.14■□□□□ 0.17
Col18a1P39061 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col18a1P39061 Trim32-202ENSMUST00000107366 3191 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col18a1P39061 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC16.14■□□□□ 0.17
Col18a1P39061 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col18a1P39061 Clca2-203ENSMUST00000198993 2774 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col18a1P39061 Ccdc15-204ENSMUST00000216042 1669 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col18a1P39061 Lbr-201ENSMUST00000005003 3510 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col18a1P39061 Klhdc8b-207ENSMUST00000193286 2956 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col18a1P39061 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Col18a1P39061 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Col18a1P39061 Tal1-203ENSMUST00000161601 3703 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col18a1P39061 Gm15935-201ENSMUST00000141004 607 ntTSL 3 BASIC16.13■□□□□ 0.17
Col18a1P39061 Gm27956-201ENSMUST00000175604 260 ntBASIC16.13■□□□□ 0.17
Col18a1P39061 Nmbr-207ENSMUST00000190751 921 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Col18a1P39061 CT010486.3-201ENSMUST00000224555 811 ntBASIC16.13■□□□□ 0.17
Col18a1P39061 Ifi27-201ENSMUST00000066701 889 ntAPPRIS P4 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col18a1P39061 Kif7-201ENSMUST00000059836 4521 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col18a1P39061 Trp53i11-202ENSMUST00000111266 2703 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col18a1P39061 Esm1-201ENSMUST00000038144 2097 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col18a1P39061 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Col18a1P39061 Gm10277-201ENSMUST00000092883 2295 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
Col18a1P39061 Rspry1-202ENSMUST00000121101 3092 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Col18a1P39061 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col18a1P39061 Wiz-201ENSMUST00000064694 2871 ntAPPRIS P4 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col18a1P39061 Zbed4-201ENSMUST00000041297 5425 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col18a1P39061 Zfp784-201ENSMUST00000062428 2153 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col18a1P39061 Gm12246-201ENSMUST00000129126 503 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Col18a1P39061 Gm25677-201ENSMUST00000174983 72 ntBASIC16.13■□□□□ 0.17
Col18a1P39061 Gm26272-201ENSMUST00000179241 132 ntBASIC16.13■□□□□ 0.17
Col18a1P39061 A930036I15Rik-201ENSMUST00000196018 1045 ntBASIC16.13■□□□□ 0.17
Col18a1P39061 H3f3a-201ENSMUST00000081026 888 ntAPPRIS ALT1 TSL 5 BASIC16.13■□□□□ 0.17
Col18a1P39061 Ube3a-216ENSMUST00000202945 3889 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Col18a1P39061 Sptlc1-201ENSMUST00000021920 2606 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col18a1P39061 Airn-205ENSMUST00000161890 1375 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Col18a1P39061 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Col18a1P39061 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Col18a1P39061 Scg3-201ENSMUST00000034699 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col18a1P39061 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col18a1P39061 Cep131-201ENSMUST00000106227 3578 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col18a1P39061 Cep131-202ENSMUST00000106229 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col18a1P39061 Cep131-207ENSMUST00000180242 3581 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Col18a1P39061 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col18a1P39061 Hmgn2-201ENSMUST00000100472 881 ntAPPRIS ALT1 TSL 2 BASIC16.12■□□□□ 0.17
Col18a1P39061 Myl2-203ENSMUST00000111751 889 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
Col18a1P39061 Gm15374-201ENSMUST00000119313 844 ntBASIC16.12■□□□□ 0.17
Col18a1P39061 Gm16030-201ENSMUST00000159098 603 ntBASIC16.12■□□□□ 0.17
Col18a1P39061 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col18a1P39061 Gm23400-201ENSMUST00000174994 102 ntBASIC16.12■□□□□ 0.17
Col18a1P39061 Gm26463-201ENSMUST00000175065 101 ntBASIC16.12■□□□□ 0.17
Col18a1P39061 Gm24332-201ENSMUST00000175102 102 ntBASIC16.12■□□□□ 0.17
Col18a1P39061 Gm25959-201ENSMUST00000175112 102 ntBASIC16.12■□□□□ 0.17
Col18a1P39061 Gm22475-201ENSMUST00000175169 102 ntBASIC16.12■□□□□ 0.17
Col18a1P39061 Gm22903-201ENSMUST00000175193 102 ntBASIC16.12■□□□□ 0.17
Col18a1P39061 Gm25070-201ENSMUST00000175237 102 ntBASIC16.12■□□□□ 0.17
Col18a1P39061 Gm24159-201ENSMUST00000175264 102 ntBASIC16.12■□□□□ 0.17
Col18a1P39061 Gm25299-201ENSMUST00000175283 102 ntBASIC16.12■□□□□ 0.17
Col18a1P39061 Gm23798-201ENSMUST00000175560 102 ntBASIC16.12■□□□□ 0.17
Col18a1P39061 Gm23802-201ENSMUST00000175565 102 ntBASIC16.12■□□□□ 0.17
Col18a1P39061 Gm25708-201ENSMUST00000177687 102 ntBASIC16.12■□□□□ 0.17
Col18a1P39061 Gm24370-201ENSMUST00000178007 102 ntBASIC16.12■□□□□ 0.17
Col18a1P39061 Gm23049-201ENSMUST00000178068 102 ntBASIC16.12■□□□□ 0.17
Col18a1P39061 Gm28019-201ENSMUST00000178138 101 ntBASIC16.12■□□□□ 0.17
Col18a1P39061 Gm25571-201ENSMUST00000178322 102 ntBASIC16.12■□□□□ 0.17
Col18a1P39061 Gm25355-201ENSMUST00000178456 101 ntBASIC16.12■□□□□ 0.17
Col18a1P39061 Gm24975-201ENSMUST00000178492 101 ntBASIC16.12■□□□□ 0.17
Col18a1P39061 Gm23189-201ENSMUST00000178954 102 ntBASIC16.12■□□□□ 0.17
Col18a1P39061 Gm25100-201ENSMUST00000179750 101 ntBASIC16.12■□□□□ 0.17
Col18a1P39061 Gm23064-201ENSMUST00000179866 101 ntBASIC16.12■□□□□ 0.17
Col18a1P39061 Gm43163-201ENSMUST00000196571 442 ntBASIC16.12■□□□□ 0.17
Col18a1P39061 Gm18642-201ENSMUST00000206642 1400 ntBASIC16.12■□□□□ 0.17
Col18a1P39061 Pet100-203ENSMUST00000207389 363 ntTSL 2 BASIC16.12■□□□□ 0.17
Col18a1P39061 Gm45199-201ENSMUST00000207640 1507 ntBASIC16.12■□□□□ 0.17
Col18a1P39061 Gm7904-201ENSMUST00000217049 465 ntBASIC16.12■□□□□ 0.17
Col18a1P39061 Triap1-201ENSMUST00000031508 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col18a1P39061 1110059E24Rik-201ENSMUST00000038830 1614 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col18a1P39061 Tsga10ip-201ENSMUST00000044527 487 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col18a1P39061 Elob-201ENSMUST00000069579 508 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col18a1P39061 Ssbp2-201ENSMUST00000004094 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 43.9 ms