Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
BDNFP23560 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
BDNFP23560 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
BDNFP23560 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
BDNFP23560 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
BDNFP23560 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
BDNFP23560 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
BDNFP23560 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.22
BDNFP23560 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC16.39■□□□□ 0.22
BDNFP23560 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
BDNFP23560 AC105250.1-201ENST00000509378 2057 ntBASIC16.39■□□□□ 0.21
BDNFP23560 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC16.39■□□□□ 0.21
BDNFP23560 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
BDNFP23560 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
BDNFP23560 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
BDNFP23560 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
BDNFP23560 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
BDNFP23560 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC16.39■□□□□ 0.21
BDNFP23560 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC16.39■□□□□ 0.21
BDNFP23560 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC16.39■□□□□ 0.21
BDNFP23560 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
BDNFP23560 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
BDNFP23560 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
BDNFP23560 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC16.39■□□□□ 0.21
BDNFP23560 AC079776.1-201ENST00000401540 1152 ntBASIC16.39■□□□□ 0.21
BDNFP23560 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
BDNFP23560 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC16.39■□□□□ 0.21
BDNFP23560 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC16.39■□□□□ 0.21
BDNFP23560 USP32P1-208ENST00000506594 1164 ntBASIC16.39■□□□□ 0.21
BDNFP23560 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC16.39■□□□□ 0.21
BDNFP23560 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
BDNFP23560 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC16.39■□□□□ 0.21
BDNFP23560 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC16.39■□□□□ 0.21
BDNFP23560 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC16.39■□□□□ 0.21
BDNFP23560 GPR39-203ENST00000622084 900 ntTSL 5 BASIC16.39■□□□□ 0.21
BDNFP23560 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
BDNFP23560 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC16.39■□□□□ 0.21
BDNFP23560 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
BDNFP23560 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
BDNFP23560 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
BDNFP23560 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
BDNFP23560 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
BDNFP23560 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
BDNFP23560 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
BDNFP23560 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
BDNFP23560 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
BDNFP23560 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
BDNFP23560 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
BDNFP23560 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
BDNFP23560 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
BDNFP23560 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
BDNFP23560 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
BDNFP23560 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
BDNFP23560 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
BDNFP23560 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
BDNFP23560 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
BDNFP23560 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
BDNFP23560 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
BDNFP23560 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC16.38■□□□□ 0.21
BDNFP23560 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
BDNFP23560 ARSEP1-201ENST00000420443 635 ntBASIC16.38■□□□□ 0.21
BDNFP23560 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC16.38■□□□□ 0.21
BDNFP23560 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC16.38■□□□□ 0.21
BDNFP23560 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC16.38■□□□□ 0.21
BDNFP23560 AP001582.1-201ENST00000525856 295 ntBASIC16.38■□□□□ 0.21
BDNFP23560 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC16.38■□□□□ 0.21
BDNFP23560 SLC25A47P1-201ENST00000531577 414 ntBASIC16.38■□□□□ 0.21
BDNFP23560 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC16.38■□□□□ 0.21
BDNFP23560 NOP2-220ENST00000545915 630 ntTSL 2 BASIC16.38■□□□□ 0.21
BDNFP23560 RAB43P1-201ENST00000561790 589 ntBASIC16.38■□□□□ 0.21
BDNFP23560 AC106886.1-201ENST00000568660 600 ntBASIC16.38■□□□□ 0.21
BDNFP23560 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
BDNFP23560 BTNL10-201ENST00000595971 695 ntBASIC16.38■□□□□ 0.21
BDNFP23560 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
BDNFP23560 METTL26-214ENST00000614890 801 ntTSL 3 BASIC16.38■□□□□ 0.21
BDNFP23560 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
BDNFP23560 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC16.38■□□□□ 0.21
BDNFP23560 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
BDNFP23560 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
BDNFP23560 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
BDNFP23560 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
BDNFP23560 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
BDNFP23560 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
BDNFP23560 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC16.38■□□□□ 0.21
BDNFP23560 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
BDNFP23560 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
BDNFP23560 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
BDNFP23560 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
BDNFP23560 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
BDNFP23560 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC16.37■□□□□ 0.21
BDNFP23560 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
BDNFP23560 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
BDNFP23560 AL138799.1-201ENST00000448213 1675 ntBASIC16.37■□□□□ 0.21
BDNFP23560 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
BDNFP23560 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
BDNFP23560 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
BDNFP23560 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC16.37■□□□□ 0.21
BDNFP23560 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
BDNFP23560 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
BDNFP23560 MSTO2P-201ENST00000314835 1709 ntBASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms