Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLIP3Q96DZ5 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLIP3Q96DZ5 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLIP3Q96DZ5 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLIP3Q96DZ5 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC15.18■□□□□ 0.02
CLIP3Q96DZ5 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC15.18■□□□□ 0.02
CLIP3Q96DZ5 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLIP3Q96DZ5 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CLIP3Q96DZ5 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC15.18■□□□□ 0.02
CLIP3Q96DZ5 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC15.18■□□□□ 0.02
CLIP3Q96DZ5 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC15.18■□□□□ 0.02
CLIP3Q96DZ5 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC15.18■□□□□ 0.02
CLIP3Q96DZ5 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC15.18■□□□□ 0.02
CLIP3Q96DZ5 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC15.18■□□□□ 0.02
CLIP3Q96DZ5 PTPA-220ENST00000436883 532 ntTSL 4 BASIC15.18■□□□□ 0.02
CLIP3Q96DZ5 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC15.18■□□□□ 0.02
CLIP3Q96DZ5 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC15.18■□□□□ 0.02
CLIP3Q96DZ5 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC15.18■□□□□ 0.02
CLIP3Q96DZ5 AC055876.2-201ENST00000531834 546 ntBASIC15.18■□□□□ 0.02
CLIP3Q96DZ5 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC15.18■□□□□ 0.02
CLIP3Q96DZ5 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC15.18■□□□□ 0.02
CLIP3Q96DZ5 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC15.18■□□□□ 0.02
CLIP3Q96DZ5 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC15.18■□□□□ 0.02
CLIP3Q96DZ5 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC15.18■□□□□ 0.02
CLIP3Q96DZ5 AC074044.1-201ENST00000609673 707 ntBASIC15.18■□□□□ 0.02
CLIP3Q96DZ5 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC15.18■□□□□ 0.02
CLIP3Q96DZ5 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLIP3Q96DZ5 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLIP3Q96DZ5 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC15.18■□□□□ 0.02
CLIP3Q96DZ5 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLIP3Q96DZ5 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLIP3Q96DZ5 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CLIP3Q96DZ5 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLIP3Q96DZ5 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLIP3Q96DZ5 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
CLIP3Q96DZ5 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLIP3Q96DZ5 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 AL009178.2-201ENST00000597278 2719 ntBASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 RAD18-204ENST00000418463 563 ntTSL 4 BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 RAD18-205ENST00000421052 582 ntTSL 3 BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 MEP1AP4-201ENST00000423244 1087 ntBASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 NME2P1-201ENST00000426182 414 ntBASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 AC244107.1-201ENST00000442033 332 ntBASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 CR383656.12-201ENST00000549567 513 ntBASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 SUOX-214ENST00000551841 906 ntTSL 3 BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 KRT8P37-201ENST00000451609 1420 ntBASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 CU639417.3-201ENST00000624240 1404 ntBASIC15.17■□□□□ 0.02
CLIP3Q96DZ5 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC15.16■□□□□ 0.02
CLIP3Q96DZ5 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLIP3Q96DZ5 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC15.16■□□□□ 0.02
CLIP3Q96DZ5 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLIP3Q96DZ5 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms