Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC15.49■□□□□ 0.07
TTC28Q96AY4 AP000974.1-201ENST00000623909 2387 ntBASIC15.49■□□□□ 0.07
TTC28Q96AY4 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
TTC28Q96AY4 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TTC28Q96AY4 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TTC28Q96AY4 RNF212-201ENST00000333673 1019 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
TTC28Q96AY4 AC015691.1-201ENST00000394793 535 ntTSL 3 BASIC15.49■□□□□ 0.07
TTC28Q96AY4 HLA-DMA-203ENST00000395305 777 ntBASIC15.49■□□□□ 0.07
TTC28Q96AY4 PPM1N-205ENST00000401705 771 ntTSL 3 BASIC15.49■□□□□ 0.07
TTC28Q96AY4 KLF2P1-201ENST00000447438 1042 ntBASIC15.49■□□□□ 0.07
TTC28Q96AY4 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TTC28Q96AY4 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
TTC28Q96AY4 KIR2DS4-201ENST00000339924 1608 ntAPPRIS P5 TSL 1 (best) BASIC15.48■□□□□ 0.07
TTC28Q96AY4 CROCCP2-202ENST00000412962 2773 ntBASIC15.48■□□□□ 0.07
TTC28Q96AY4 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC15.48■□□□□ 0.07
TTC28Q96AY4 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC15.48■□□□□ 0.07
TTC28Q96AY4 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC15.48■□□□□ 0.07
TTC28Q96AY4 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC15.48■□□□□ 0.07
TTC28Q96AY4 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TTC28Q96AY4 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TTC28Q96AY4 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TTC28Q96AY4 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TTC28Q96AY4 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC15.48■□□□□ 0.07
TTC28Q96AY4 SIGLEC20P-201ENST00000595243 1311 ntBASIC15.48■□□□□ 0.07
TTC28Q96AY4 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TTC28Q96AY4 SPATS1-202ENST00000323108 1107 ntAPPRIS P2 TSL 5 BASIC15.48■□□□□ 0.07
TTC28Q96AY4 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
TTC28Q96AY4 PPP1R7-205ENST00000404405 1009 ntTSL 3 BASIC15.48■□□□□ 0.07
TTC28Q96AY4 AL162377.1-202ENST00000456688 1181 ntTSL 2 BASIC15.48■□□□□ 0.07
TTC28Q96AY4 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC15.48■□□□□ 0.07
TTC28Q96AY4 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC15.48■□□□□ 0.07
TTC28Q96AY4 CYP4F36P-201ENST00000589193 186 ntBASIC15.48■□□□□ 0.07
TTC28Q96AY4 AC009560.1-201ENST00000620208 434 ntBASIC15.48■□□□□ 0.07
TTC28Q96AY4 SLC12A5-219ENST00000628272 401 ntTSL 3 BASIC15.48■□□□□ 0.07
TTC28Q96AY4 CSAG3-203ENST00000638835 793 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
TTC28Q96AY4 CSAG2-204ENST00000640702 793 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
TTC28Q96AY4 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
TTC28Q96AY4 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TTC28Q96AY4 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TTC28Q96AY4 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
TTC28Q96AY4 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TTC28Q96AY4 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
TTC28Q96AY4 GGT3P-204ENST00000453783 1664 ntBASIC15.48■□□□□ 0.07
TTC28Q96AY4 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TTC28Q96AY4 HERPUD1-202ENST00000344114 1388 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
TTC28Q96AY4 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC15.48■□□□□ 0.07
TTC28Q96AY4 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TTC28Q96AY4 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TTC28Q96AY4 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
TTC28Q96AY4 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
TTC28Q96AY4 LINC01523-201ENST00000425385 450 ntTSL 2 BASIC15.48■□□□□ 0.07
TTC28Q96AY4 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
TTC28Q96AY4 SLC9A3R2-204ENST00000563587 1037 ntTSL 2 BASIC15.48■□□□□ 0.07
TTC28Q96AY4 AL590235.1-201ENST00000564650 861 ntBASIC15.48■□□□□ 0.07
TTC28Q96AY4 GACAT2-201ENST00000579368 818 ntTSL 2 BASIC15.48■□□□□ 0.07
TTC28Q96AY4 LINC01783-202ENST00000614408 828 ntBASIC15.48■□□□□ 0.07
TTC28Q96AY4 BX284668.2-205ENST00000619677 828 ntBASIC15.48■□□□□ 0.07
TTC28Q96AY4 PHB-210ENST00000511832 1509 ntTSL 2 BASIC15.48■□□□□ 0.07
TTC28Q96AY4 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TTC28Q96AY4 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC15.47■□□□□ 0.07
TTC28Q96AY4 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC15.47■□□□□ 0.07
TTC28Q96AY4 AC025183.3-201ENST00000623526 1482 ntBASIC15.47■□□□□ 0.07
TTC28Q96AY4 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TTC28Q96AY4 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
TTC28Q96AY4 PCDHB18P-201ENST00000524813 2368 ntBASIC15.47■□□□□ 0.07
TTC28Q96AY4 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
TTC28Q96AY4 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TTC28Q96AY4 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
TTC28Q96AY4 WIPI1-201ENST00000262139 1832 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TTC28Q96AY4 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TTC28Q96AY4 AC134407.2-201ENST00000625089 1978 ntBASIC15.47■□□□□ 0.07
TTC28Q96AY4 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TTC28Q96AY4 IZUMO1R-201ENST00000328458 798 ntAPPRIS P2 TSL 5 BASIC15.47■□□□□ 0.07
TTC28Q96AY4 PDCD5-202ENST00000379316 154 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
TTC28Q96AY4 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC15.47■□□□□ 0.07
TTC28Q96AY4 AC016757.1-202ENST00000409376 892 ntTSL 3 BASIC15.47■□□□□ 0.07
TTC28Q96AY4 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC15.47■□□□□ 0.07
TTC28Q96AY4 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC15.47■□□□□ 0.07
TTC28Q96AY4 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC15.47■□□□□ 0.07
TTC28Q96AY4 RN7SL81P-201ENST00000493781 261 ntBASIC15.47■□□□□ 0.07
TTC28Q96AY4 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC15.47■□□□□ 0.07
TTC28Q96AY4 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC15.47■□□□□ 0.07
TTC28Q96AY4 PDCD5-208ENST00000592786 468 ntTSL 3 BASIC15.47■□□□□ 0.07
TTC28Q96AY4 AL450472.2-201ENST00000603663 1156 ntBASIC15.47■□□□□ 0.07
TTC28Q96AY4 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
TTC28Q96AY4 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TTC28Q96AY4 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
TTC28Q96AY4 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
TTC28Q96AY4 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC15.47■□□□□ 0.07
TTC28Q96AY4 AMT-239ENST00000636865 1914 ntTSL 5 BASIC15.47■□□□□ 0.07
TTC28Q96AY4 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
TTC28Q96AY4 AC018695.7-201ENST00000624587 2492 ntBASIC15.47■□□□□ 0.07
TTC28Q96AY4 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC15.47■□□□□ 0.07
TTC28Q96AY4 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC15.47■□□□□ 0.07
TTC28Q96AY4 SURF4-203ENST00000371991 715 ntTSL 3 BASIC15.46■□□□□ 0.07
TTC28Q96AY4 BX248123.1-201ENST00000429070 606 ntTSL 3 BASIC15.46■□□□□ 0.07
TTC28Q96AY4 FTH1P22-201ENST00000456305 520 ntBASIC15.46■□□□□ 0.07
TTC28Q96AY4 AC063952.3-201ENST00000467756 308 ntBASIC15.46■□□□□ 0.07
TTC28Q96AY4 AC026470.1-201ENST00000478038 846 ntBASIC15.46■□□□□ 0.07
TTC28Q96AY4 SELENOW-212ENST00000601048 888 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 86.2 ms