Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC19.3■□□□□ 0.68
SYNE4Q8N205 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC19.3■□□□□ 0.68
SYNE4Q8N205 OARD1-212ENST00000482515 832 ntTSL 2 BASIC19.3■□□□□ 0.68
SYNE4Q8N205 ACR-203ENST00000529621 708 ntTSL 5 BASIC19.3■□□□□ 0.68
SYNE4Q8N205 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC19.3■□□□□ 0.68
SYNE4Q8N205 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC19.3■□□□□ 0.68
SYNE4Q8N205 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
SYNE4Q8N205 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SYNE4Q8N205 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
SYNE4Q8N205 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SYNE4Q8N205 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SYNE4Q8N205 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC19.3■□□□□ 0.68
SYNE4Q8N205 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SYNE4Q8N205 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
SYNE4Q8N205 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
SYNE4Q8N205 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
SYNE4Q8N205 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SYNE4Q8N205 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC19.29■□□□□ 0.68
SYNE4Q8N205 AMT-224ENST00000635808 1610 ntTSL 5 BASIC19.29■□□□□ 0.68
SYNE4Q8N205 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SYNE4Q8N205 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC19.29■□□□□ 0.68
SYNE4Q8N205 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SYNE4Q8N205 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SYNE4Q8N205 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SYNE4Q8N205 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SYNE4Q8N205 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
SYNE4Q8N205 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SYNE4Q8N205 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SYNE4Q8N205 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SYNE4Q8N205 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SYNE4Q8N205 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SYNE4Q8N205 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SYNE4Q8N205 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC19.29■□□□□ 0.68
SYNE4Q8N205 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC19.29■□□□□ 0.68
SYNE4Q8N205 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
SYNE4Q8N205 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC19.29■□□□□ 0.68
SYNE4Q8N205 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC19.29■□□□□ 0.68
SYNE4Q8N205 PFN2-205ENST00000461868 613 ntTSL 2 BASIC19.29■□□□□ 0.68
SYNE4Q8N205 ARTN-209ENST00000479128 471 ntTSL 3 BASIC19.29■□□□□ 0.68
SYNE4Q8N205 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC19.29■□□□□ 0.68
SYNE4Q8N205 RNA5SP486-201ENST00000515961 83 ntBASIC19.29■□□□□ 0.68
SYNE4Q8N205 FOS-206ENST00000555347 1280 ntTSL 2 BASIC19.29■□□□□ 0.68
SYNE4Q8N205 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC19.29■□□□□ 0.68
SYNE4Q8N205 KLK3-211ENST00000597483 810 ntTSL 2 BASIC19.29■□□□□ 0.68
SYNE4Q8N205 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC19.29■□□□□ 0.68
SYNE4Q8N205 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SYNE4Q8N205 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC19.29■□□□□ 0.68
SYNE4Q8N205 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC19.29■□□□□ 0.68
SYNE4Q8N205 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC19.29■□□□□ 0.68
SYNE4Q8N205 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SYNE4Q8N205 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
SYNE4Q8N205 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC19.29■□□□□ 0.68
SYNE4Q8N205 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SYNE4Q8N205 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
SYNE4Q8N205 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SYNE4Q8N205 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SYNE4Q8N205 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SYNE4Q8N205 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SYNE4Q8N205 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
SYNE4Q8N205 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SYNE4Q8N205 AHCYP2-201ENST00000430630 1300 ntBASIC19.28■□□□□ 0.68
SYNE4Q8N205 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC19.28■□□□□ 0.68
SYNE4Q8N205 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC19.28■□□□□ 0.68
SYNE4Q8N205 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SYNE4Q8N205 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SYNE4Q8N205 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC19.28■□□□□ 0.68
SYNE4Q8N205 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SYNE4Q8N205 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SYNE4Q8N205 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SYNE4Q8N205 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC19.28■□□□□ 0.68
SYNE4Q8N205 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SYNE4Q8N205 WAC-202ENST00000347934 2839 ntTSL 5 BASIC19.28■□□□□ 0.68
SYNE4Q8N205 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC19.28■□□□□ 0.68
SYNE4Q8N205 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
SYNE4Q8N205 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC19.28■□□□□ 0.68
SYNE4Q8N205 ACTBP8-201ENST00000403258 1108 ntBASIC19.28■□□□□ 0.68
SYNE4Q8N205 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SYNE4Q8N205 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC19.28■□□□□ 0.68
SYNE4Q8N205 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC19.28■□□□□ 0.68
SYNE4Q8N205 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC19.28■□□□□ 0.68
SYNE4Q8N205 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
SYNE4Q8N205 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SYNE4Q8N205 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC19.28■□□□□ 0.68
SYNE4Q8N205 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC19.28■□□□□ 0.68
SYNE4Q8N205 NEU3-202ENST00000526068 431 ntTSL 2 BASIC19.28■□□□□ 0.68
SYNE4Q8N205 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SYNE4Q8N205 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC19.28■□□□□ 0.68
SYNE4Q8N205 PRSS30P-206ENST00000641773 873 ntBASIC19.28■□□□□ 0.68
SYNE4Q8N205 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SYNE4Q8N205 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC19.28■□□□□ 0.68
SYNE4Q8N205 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
SYNE4Q8N205 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
SYNE4Q8N205 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SYNE4Q8N205 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SYNE4Q8N205 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SYNE4Q8N205 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
SYNE4Q8N205 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SYNE4Q8N205 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SYNE4Q8N205 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
SYNE4Q8N205 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 63.4 ms