Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 A430093F15Rik-204ENSMUST00000186596 2115 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Usp47Q8BY87 Kalrn-209ENSMUST00000114963 3207 ntTSL 5 BASIC17.71■□□□□ 0.43
Usp47Q8BY87 Tle1-203ENSMUST00000074216 4369 ntAPPRIS ALT1 TSL 5 BASIC17.71■□□□□ 0.43
Usp47Q8BY87 Gm5580-201ENSMUST00000122096 1362 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
Usp47Q8BY87 Ccdc92b-201ENSMUST00000100866 4002 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usp47Q8BY87 Cd300lf-202ENSMUST00000106561 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usp47Q8BY87 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usp47Q8BY87 C230034O21Rik-201ENSMUST00000153659 2836 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Usp47Q8BY87 Pax5-204ENSMUST00000107826 1228 ntTSL 5 BASIC17.71■□□□□ 0.43
Usp47Q8BY87 Il15ra-204ENSMUST00000114832 468 ntTSL 5 BASIC17.71■□□□□ 0.43
Usp47Q8BY87 Gm14208-201ENSMUST00000119645 678 ntBASIC17.71■□□□□ 0.43
Usp47Q8BY87 Gm12997-201ENSMUST00000120207 640 ntBASIC17.71■□□□□ 0.43
Usp47Q8BY87 Gm10863-201ENSMUST00000130745 438 ntTSL 3 BASIC17.71■□□□□ 0.43
Usp47Q8BY87 Dnajc25-204ENSMUST00000152199 1141 ntTSL 5 BASIC17.71■□□□□ 0.43
Usp47Q8BY87 Gm13165-201ENSMUST00000152923 383 ntTSL 5 BASIC17.71■□□□□ 0.43
Usp47Q8BY87 Lypd1-203ENSMUST00000159529 989 ntTSL 2 BASIC17.71■□□□□ 0.43
Usp47Q8BY87 Ccdc188-201ENSMUST00000167061 747 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
Usp47Q8BY87 Pfn1-201ENSMUST00000018437 861 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usp47Q8BY87 Gm32850-202ENSMUST00000209149 732 ntTSL 5 BASIC17.71■□□□□ 0.43
Usp47Q8BY87 Gm26953-204ENSMUST00000212526 553 ntTSL 5 BASIC17.71■□□□□ 0.43
Usp47Q8BY87 AC153974.2-201ENSMUST00000218577 1025 ntBASIC17.71■□□□□ 0.43
Usp47Q8BY87 Gm32141-201ENSMUST00000220189 488 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Usp47Q8BY87 Elovl1-202ENSMUST00000067896 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usp47Q8BY87 Mb21d1-201ENSMUST00000034898 3231 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Usp47Q8BY87 Lman1l-202ENSMUST00000093832 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usp47Q8BY87 Serpinh1-203ENSMUST00000207849 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usp47Q8BY87 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usp47Q8BY87 Adgrl1-210ENSMUST00000152978 5734 ntTSL 5 BASIC17.71■□□□□ 0.43
Usp47Q8BY87 Ebf1-202ENSMUST00000101326 3422 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usp47Q8BY87 Pcp4l1-201ENSMUST00000111332 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usp47Q8BY87 2900089D17Rik-201ENSMUST00000124015 2475 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Usp47Q8BY87 Ccndbp1-201ENSMUST00000060455 1569 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usp47Q8BY87 Prrt3-203ENSMUST00000204268 3741 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usp47Q8BY87 Gm9530-201ENSMUST00000181160 3281 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Usp47Q8BY87 Mau2-201ENSMUST00000050561 5369 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usp47Q8BY87 Stim1-201ENSMUST00000033289 4085 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usp47Q8BY87 Diaph1-204ENSMUST00000115631 5741 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Usp47Q8BY87 Zfp334-201ENSMUST00000103084 8205 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usp47Q8BY87 Kcnk2-202ENSMUST00000110920 3572 ntAPPRIS ALT1 TSL 5 BASIC17.71■□□□□ 0.42
Usp47Q8BY87 Cd200r1-201ENSMUST00000057488 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Usp47Q8BY87 Dbn1-201ENSMUST00000021950 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
Usp47Q8BY87 Arhgap22-202ENSMUST00000111956 2596 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp47Q8BY87 Dennd2d-201ENSMUST00000029508 4050 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp47Q8BY87 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp47Q8BY87 Mark2-215ENSMUST00000168872 2124 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Usp47Q8BY87 AC159195.1-201ENSMUST00000225867 2086 ntBASIC17.7■□□□□ 0.42
Usp47Q8BY87 Fbxl12-202ENSMUST00000086459 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp47Q8BY87 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp47Q8BY87 Hsd17b10-202ENSMUST00000112617 992 ntTSL 5 BASIC17.7■□□□□ 0.42
Usp47Q8BY87 Pyy-202ENSMUST00000127381 529 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
Usp47Q8BY87 Magohb-205ENSMUST00000173837 897 ntTSL 5 BASIC17.7■□□□□ 0.42
Usp47Q8BY87 Gm29856-201ENSMUST00000191905 1257 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Usp47Q8BY87 Gm8913-201ENSMUST00000209491 641 ntBASIC17.7■□□□□ 0.42
Usp47Q8BY87 Gm31224-201ENSMUST00000212682 513 ntTSL 3 BASIC17.7■□□□□ 0.42
Usp47Q8BY87 Mt2-202ENSMUST00000212806 388 ntTSL 2 BASIC17.7■□□□□ 0.42
Usp47Q8BY87 Gm31793-201ENSMUST00000218557 415 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Usp47Q8BY87 CT573034.1-201ENSMUST00000222983 313 ntBASIC17.7■□□□□ 0.42
Usp47Q8BY87 CT030182.1-201ENSMUST00000225935 533 ntBASIC17.7■□□□□ 0.42
Usp47Q8BY87 Hsd17b10-201ENSMUST00000026289 962 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp47Q8BY87 BC049730-201ENSMUST00000051714 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp47Q8BY87 Aurkc-201ENSMUST00000086248 1154 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp47Q8BY87 Phldb1-210ENSMUST00000134465 5244 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Usp47Q8BY87 St6galnac6-202ENSMUST00000081879 2345 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Usp47Q8BY87 Ahdc1-202ENSMUST00000105914 5898 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Usp47Q8BY87 Tspan32-201ENSMUST00000009396 1582 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp47Q8BY87 Git1-201ENSMUST00000037285 3512 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp47Q8BY87 Acap1-201ENSMUST00000001631 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp47Q8BY87 Rnf10-202ENSMUST00000112096 3112 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp47Q8BY87 Lig3-202ENSMUST00000080461 3056 ntTSL 5 BASIC17.7■□□□□ 0.42
Usp47Q8BY87 Ddx55-202ENSMUST00000111438 2737 ntTSL 2 BASIC17.7■□□□□ 0.42
Usp47Q8BY87 Ccser2-202ENSMUST00000090024 7509 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp47Q8BY87 Phka1-201ENSMUST00000043596 5938 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp47Q8BY87 Tmx2-203ENSMUST00000111665 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp47Q8BY87 Mier3-203ENSMUST00000109272 5279 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp47Q8BY87 Gba-202ENSMUST00000167998 1938 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp47Q8BY87 Mtm1-203ENSMUST00000061970 3379 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp47Q8BY87 Col5a3-201ENSMUST00000004201 6119 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp47Q8BY87 Sectm1a-204ENSMUST00000106120 1020 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Usp47Q8BY87 Tcf7l2-205ENSMUST00000111651 1127 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Usp47Q8BY87 Gng7-205ENSMUST00000118465 875 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp47Q8BY87 A430060F13Rik-201ENSMUST00000124176 378 ntBASIC17.69■□□□□ 0.42
Usp47Q8BY87 Gm26361-201ENSMUST00000158868 186 ntBASIC17.69■□□□□ 0.42
Usp47Q8BY87 Gm2260-201ENSMUST00000184965 657 ntBASIC17.69■□□□□ 0.42
Usp47Q8BY87 1700028J19Rik-201ENSMUST00000037220 1245 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp47Q8BY87 Blvrb-201ENSMUST00000037399 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp47Q8BY87 Aaas-201ENSMUST00000041208 1816 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp47Q8BY87 Fmo1-201ENSMUST00000046049 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp47Q8BY87 Gm44260-201ENSMUST00000204946 2094 ntBASIC17.69■□□□□ 0.42
Usp47Q8BY87 Gsn-205ENSMUST00000201185 2607 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp47Q8BY87 Ptprk-202ENSMUST00000218276 4754 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Usp47Q8BY87 Hao1-201ENSMUST00000028704 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp47Q8BY87 Sh3gl3-206ENSMUST00000179318 1489 ntTSL 5 BASIC17.69■□□□□ 0.42
Usp47Q8BY87 Cand2-201ENSMUST00000075995 5474 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp47Q8BY87 Rims1-201ENSMUST00000081544 5954 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Usp47Q8BY87 Adcyap1r1-203ENSMUST00000165786 1745 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Usp47Q8BY87 Pmp2-201ENSMUST00000029034 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp47Q8BY87 Rnf17-202ENSMUST00000223627 2077 ntBASIC17.69■□□□□ 0.42
Usp47Q8BY87 Uspl1-205ENSMUST00000121416 3792 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp47Q8BY87 Cpeb3-212ENSMUST00000154376 5671 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp47Q8BY87 Tmem19-206ENSMUST00000218731 1346 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 35.9 ms