Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP54Q70EL1 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
USP54Q70EL1 MIR33B-201ENST00000385104 96 ntBASIC20.3■□□□□ 0.84
USP54Q70EL1 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
USP54Q70EL1 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC20.3■□□□□ 0.84
USP54Q70EL1 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC20.3■□□□□ 0.84
USP54Q70EL1 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
USP54Q70EL1 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
USP54Q70EL1 AC018635.2-201ENST00000608625 364 ntBASIC20.3■□□□□ 0.84
USP54Q70EL1 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC20.3■□□□□ 0.84
USP54Q70EL1 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP54Q70EL1 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
USP54Q70EL1 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC20.3■□□□□ 0.84
USP54Q70EL1 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
USP54Q70EL1 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC20.3■□□□□ 0.84
USP54Q70EL1 API5-202ENST00000420461 2009 ntTSL 2 BASIC20.3■□□□□ 0.84
USP54Q70EL1 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC20.3■□□□□ 0.84
USP54Q70EL1 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC20.3■□□□□ 0.84
USP54Q70EL1 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC20.3■□□□□ 0.84
USP54Q70EL1 AC010491.1-201ENST00000563101 2797 ntBASIC20.3■□□□□ 0.84
USP54Q70EL1 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP54Q70EL1 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP54Q70EL1 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP54Q70EL1 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
USP54Q70EL1 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
USP54Q70EL1 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC20.29■□□□□ 0.84
USP54Q70EL1 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC20.29■□□□□ 0.84
USP54Q70EL1 AL161670.2-201ENST00000557650 1227 ntBASIC20.29■□□□□ 0.84
USP54Q70EL1 AC079328.1-201ENST00000560358 952 ntBASIC20.29■□□□□ 0.84
USP54Q70EL1 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
USP54Q70EL1 HCG18-245ENST00000602550 559 ntTSL 4 BASIC20.29■□□□□ 0.84
USP54Q70EL1 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
USP54Q70EL1 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC20.29■□□□□ 0.84
USP54Q70EL1 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP54Q70EL1 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP54Q70EL1 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP54Q70EL1 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP54Q70EL1 DKFZP434H168-201ENST00000567381 1905 ntBASIC20.29■□□□□ 0.84
USP54Q70EL1 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
USP54Q70EL1 AC106820.2-201ENST00000563775 3264 ntBASIC20.29■□□□□ 0.84
USP54Q70EL1 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP54Q70EL1 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC20.29■□□□□ 0.84
USP54Q70EL1 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
USP54Q70EL1 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC20.29■□□□□ 0.84
USP54Q70EL1 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP54Q70EL1 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC20.29■□□□□ 0.84
USP54Q70EL1 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
USP54Q70EL1 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP54Q70EL1 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC20.29■□□□□ 0.84
USP54Q70EL1 AL008707.1-201ENST00000422498 534 ntBASIC20.29■□□□□ 0.84
USP54Q70EL1 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC20.29■□□□□ 0.84
USP54Q70EL1 RN7SL769P-201ENST00000469386 295 ntBASIC20.29■□□□□ 0.84
USP54Q70EL1 RETN-203ENST00000629642 400 ntTSL 5 BASIC20.29■□□□□ 0.84
USP54Q70EL1 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC20.29■□□□□ 0.84
USP54Q70EL1 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC20.28■□□□□ 0.84
USP54Q70EL1 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP54Q70EL1 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP54Q70EL1 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
USP54Q70EL1 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP54Q70EL1 E2F3P2-201ENST00000447755 1422 ntBASIC20.28■□□□□ 0.84
USP54Q70EL1 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC20.28■□□□□ 0.84
USP54Q70EL1 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP54Q70EL1 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP54Q70EL1 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
USP54Q70EL1 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP54Q70EL1 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
USP54Q70EL1 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC20.28■□□□□ 0.84
USP54Q70EL1 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP54Q70EL1 ELK2AP-201ENST00000392510 1007 ntBASIC20.28■□□□□ 0.84
USP54Q70EL1 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
USP54Q70EL1 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC20.28■□□□□ 0.84
USP54Q70EL1 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC20.28■□□□□ 0.84
USP54Q70EL1 AC005740.2-201ENST00000511085 419 ntBASIC20.28■□□□□ 0.84
USP54Q70EL1 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC20.28■□□□□ 0.84
USP54Q70EL1 MEG3_2.1-201ENST00000611456 105 ntBASIC20.28■□□□□ 0.84
USP54Q70EL1 AL136301.1-201ENST00000615830 422 ntBASIC20.28■□□□□ 0.84
USP54Q70EL1 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP54Q70EL1 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
USP54Q70EL1 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
USP54Q70EL1 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP54Q70EL1 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC20.28■□□□□ 0.84
USP54Q70EL1 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC20.28■□□□□ 0.84
USP54Q70EL1 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC20.28■□□□□ 0.84
USP54Q70EL1 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
USP54Q70EL1 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP54Q70EL1 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC20.27■□□□□ 0.84
USP54Q70EL1 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
USP54Q70EL1 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC20.27■□□□□ 0.84
USP54Q70EL1 AC244394.1-201ENST00000435000 1665 ntBASIC20.27■□□□□ 0.84
USP54Q70EL1 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
USP54Q70EL1 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
USP54Q70EL1 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
USP54Q70EL1 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
USP54Q70EL1 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC20.27■□□□□ 0.84
USP54Q70EL1 AC012508.2-201ENST00000567613 1472 ntBASIC20.27■□□□□ 0.84
USP54Q70EL1 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC20.27■□□□□ 0.84
USP54Q70EL1 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
USP54Q70EL1 FAM90A7P-201ENST00000382628 1395 ntBASIC20.27■□□□□ 0.84
USP54Q70EL1 FAM90A23P-201ENST00000400136 1395 ntBASIC20.27■□□□□ 0.84
USP54Q70EL1 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC20.27■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 66.4 ms