Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 MFF-223ENST00000524634 647 ntTSL 2 BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 ALG1L8P-201ENST00000533887 760 ntBASIC4.9□□□□□ -1.62
SYNE1Q8NF91 SNX29P1-201ENST00000548357 1007 ntBASIC4.9□□□□□ -1.62
SYNE1Q8NF91 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 CPLX2-201ENST00000359546 5023 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 KCNAB2-202ENST00000341524 4207 ntAPPRIS P4 TSL 1 (best) BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 VMO1-203ENST00000416307 712 ntTSL 2 BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 AC135586.1-201ENST00000539323 574 ntBASIC4.9□□□□□ -1.62
SYNE1Q8NF91 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 SATB2-AS1-205ENST00000450728 3314 ntTSL 2 BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 MIR658-201ENST00000385210 100 ntBASIC4.9□□□□□ -1.63
SYNE1Q8NF91 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 FAM8A2P-201ENST00000528813 1142 ntBASIC4.9□□□□□ -1.63
SYNE1Q8NF91 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 AL109936.8-201ENST00000641772 604 ntBASIC4.9□□□□□ -1.63
SYNE1Q8NF91 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 SLC4A7-207ENST00000437179 3667 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 EMBP1-203ENST00000622787 4235 ntTSL 2 BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 CAND2-204ENST00000456430 4573 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 PTPA-220ENST00000436883 532 ntTSL 4 BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 CCDC142-202ENST00000393965 3406 ntAPPRIS ALT2 TSL 1 (best) BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 AC055876.2-201ENST00000531834 546 ntBASIC4.9□□□□□ -1.63
SYNE1Q8NF91 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 TMEM261P1-201ENST00000604899 340 ntBASIC4.9□□□□□ -1.63
SYNE1Q8NF91 AC013467.2-201ENST00000605472 835 ntBASIC4.9□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms