Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Cmpk2-201ENSMUST00000020969 3200 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim28Q62318 Mocos-201ENSMUST00000068006 2884 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim28Q62318 Wdr90-201ENSMUST00000079461 5991 ntAPPRIS P2 TSL 5 BASIC16.35■□□□□ 0.21
Trim28Q62318 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Trim28Q62318 Ywhaz-203ENSMUST00000110361 2285 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim28Q62318 Wfdc8-201ENSMUST00000094351 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim28Q62318 Prrt3-205ENSMUST00000205170 1903 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
Trim28Q62318 Nxf1-201ENSMUST00000010241 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim28Q62318 Slc5a11-201ENSMUST00000033035 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim28Q62318 Aacs-201ENSMUST00000031445 3239 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim28Q62318 Ndel1-202ENSMUST00000101017 1646 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Trim28Q62318 Ano6-201ENSMUST00000071874 4927 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim28Q62318 Il12rb1-201ENSMUST00000000808 2873 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim28Q62318 Arl14ep-201ENSMUST00000028536 3337 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim28Q62318 Myl4-202ENSMUST00000106956 900 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim28Q62318 Gm16066-201ENSMUST00000118575 1086 ntTSL 3 BASIC16.35■□□□□ 0.21
Trim28Q62318 Abhd14a-203ENSMUST00000171925 1122 ntTSL 3 BASIC16.35■□□□□ 0.21
Trim28Q62318 Kcnip4-207ENSMUST00000176191 2116 ntTSL 5 BASIC16.35■□□□□ 0.21
Trim28Q62318 Myl4-201ENSMUST00000018800 879 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim28Q62318 AY036118-201ENSMUST00000200021 923 ntBASIC16.35■□□□□ 0.21
Trim28Q62318 Gm43068-201ENSMUST00000201095 1273 ntBASIC16.35■□□□□ 0.21
Trim28Q62318 Abhd14b-210ENSMUST00000217496 631 ntTSL 5 BASIC16.35■□□□□ 0.21
Trim28Q62318 Gm31793-201ENSMUST00000218557 415 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Trim28Q62318 1700028J19Rik-201ENSMUST00000037220 1245 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim28Q62318 Ebp-201ENSMUST00000033509 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim28Q62318 Pip5k1c-201ENSMUST00000045469 4323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim28Q62318 Etfrf1-203ENSMUST00000111721 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim28Q62318 Pitpnm2-209ENSMUST00000161938 5866 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim28Q62318 Clcn3-204ENSMUST00000110301 4099 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim28Q62318 Fbln1-201ENSMUST00000057410 3659 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim28Q62318 Trim26-210ENSMUST00000179968 3203 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
Trim28Q62318 Kcnma1-214ENSMUST00000190044 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim28Q62318 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim28Q62318 Zbtb46-201ENSMUST00000029106 5309 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Trim28Q62318 Chrnd-202ENSMUST00000186373 2949 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Trim28Q62318 Nxpe3-201ENSMUST00000099705 6430 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim28Q62318 Nrg1-201ENSMUST00000073884 2452 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Trim28Q62318 Ralgps2-214ENSMUST00000191605 2958 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim28Q62318 Sema6c-202ENSMUST00000090823 4029 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim28Q62318 Lexm-204ENSMUST00000189032 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim28Q62318 Mpp3-204ENSMUST00000107168 3094 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Trim28Q62318 4930550L24Rik-201ENSMUST00000062542 1572 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trim28Q62318 Fgfr3-210ENSMUST00000169212 4245 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trim28Q62318 Jhy-201ENSMUST00000034521 3074 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Trim28Q62318 Myrf-201ENSMUST00000088013 5674 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
Trim28Q62318 Prr15l-203ENSMUST00000107633 930 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
Trim28Q62318 Fgf8-204ENSMUST00000111925 702 ntTSL 5 BASIC16.34■□□□□ 0.21
Trim28Q62318 Gm16481-201ENSMUST00000119074 1227 ntBASIC16.34■□□□□ 0.21
Trim28Q62318 Dnajb6-202ENSMUST00000012734 1024 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Trim28Q62318 Hmgn1-202ENSMUST00000133885 261 ntTSL 5 BASIC16.34■□□□□ 0.21
Trim28Q62318 Apoe-208ENSMUST00000174191 472 ntTSL 2 BASIC16.34■□□□□ 0.21
Trim28Q62318 Gm28450-201ENSMUST00000187349 638 ntBASIC16.34■□□□□ 0.21
Trim28Q62318 Cacng1-201ENSMUST00000021065 1249 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trim28Q62318 Ptpn7-203ENSMUST00000187985 1990 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Trim28Q62318 Rbm8a2-201ENSMUST00000104983 1338 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
Trim28Q62318 Syt1-201ENSMUST00000064054 4745 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trim28Q62318 Pnp2-201ENSMUST00000095925 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trim28Q62318 Trpm4-201ENSMUST00000042194 4234 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trim28Q62318 Tmem201-203ENSMUST00000105687 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trim28Q62318 Exosc1-202ENSMUST00000112123 1499 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Trim28Q62318 Cdk15-201ENSMUST00000114248 1477 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trim28Q62318 Dnmt3l-202ENSMUST00000123940 1452 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Trim28Q62318 Eif4enif1-202ENSMUST00000110048 3712 ntTSL 5 BASIC16.34■□□□□ 0.21
Trim28Q62318 Ccdc22-201ENSMUST00000033483 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trim28Q62318 Dgkq-201ENSMUST00000053913 4938 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trim28Q62318 Spcs3-201ENSMUST00000067476 3466 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Trim28Q62318 Loxl2-201ENSMUST00000022660 5316 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Trim28Q62318 Klc2-202ENSMUST00000113727 2874 ntTSL 5 BASIC16.33■□□□□ 0.21
Trim28Q62318 Washc5-201ENSMUST00000022976 4033 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Trim28Q62318 Tacr2-201ENSMUST00000020278 2258 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim28Q62318 Atxn10-201ENSMUST00000163242 2425 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim28Q62318 5031415H12Rik-201ENSMUST00000181546 2481 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Trim28Q62318 Gm11989-201ENSMUST00000117240 672 ntBASIC16.33■□□□□ 0.2
Trim28Q62318 Gm11362-201ENSMUST00000118838 850 ntBASIC16.33■□□□□ 0.2
Trim28Q62318 Atp10d-206ENSMUST00000169617 761 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Trim28Q62318 Lsm2-207ENSMUST00000173004 870 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Trim28Q62318 Tnnt1-213ENSMUST00000178163 934 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
Trim28Q62318 Mir6927-201ENSMUST00000184494 71 ntBASIC16.33■□□□□ 0.2
Trim28Q62318 Ip6k2-202ENSMUST00000192028 1199 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Trim28Q62318 Pex1-208ENSMUST00000195894 528 ntTSL 3 BASIC16.33■□□□□ 0.2
Trim28Q62318 AC164573.1-201ENSMUST00000218616 963 ntTSL 5 BASIC16.33■□□□□ 0.2
Trim28Q62318 4930569F06Rik-201ENSMUST00000036821 433 ntBASIC16.33■□□□□ 0.2
Trim28Q62318 Prr15l-202ENSMUST00000062172 1242 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim28Q62318 Socs4-201ENSMUST00000065562 6877 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim28Q62318 Gramd2-201ENSMUST00000098661 1368 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim28Q62318 Abhd6-201ENSMUST00000026313 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim28Q62318 9330182L06Rik-201ENSMUST00000069538 4688 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim28Q62318 Enc1-201ENSMUST00000041623 4737 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim28Q62318 Aire-202ENSMUST00000105395 1630 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Trim28Q62318 Palm2-202ENSMUST00000102905 3271 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Trim28Q62318 Pcdha1-202ENSMUST00000193839 4925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim28Q62318 Ids-201ENSMUST00000101509 4972 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim28Q62318 Mapk3-203ENSMUST00000091328 1716 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Trim28Q62318 A530072M11Rik-201ENSMUST00000151122 1852 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Trim28Q62318 Hnf1b-202ENSMUST00000108113 2376 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Trim28Q62318 Samd11-202ENSMUST00000217934 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim28Q62318 Hspa9-201ENSMUST00000025217 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim28Q62318 Hspa12b-201ENSMUST00000099349 3413 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim28Q62318 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim28Q62318 Bcl6-201ENSMUST00000023151 3525 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 30.8 ms