Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim3Q9R1R2 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
Trim3Q9R1R2 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim3Q9R1R2 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim3Q9R1R2 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim3Q9R1R2 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC19.68■□□□□ 0.74
Trim3Q9R1R2 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC19.68■□□□□ 0.74
Trim3Q9R1R2 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Trim3Q9R1R2 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim3Q9R1R2 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim3Q9R1R2 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Trim3Q9R1R2 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Trim3Q9R1R2 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Trim3Q9R1R2 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Trim3Q9R1R2 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC19.67■□□□□ 0.74
Trim3Q9R1R2 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim3Q9R1R2 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim3Q9R1R2 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim3Q9R1R2 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim3Q9R1R2 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Trim3Q9R1R2 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim3Q9R1R2 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim3Q9R1R2 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC19.66■□□□□ 0.74
Trim3Q9R1R2 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Trim3Q9R1R2 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
Trim3Q9R1R2 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim3Q9R1R2 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim3Q9R1R2 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC19.65■□□□□ 0.74
Trim3Q9R1R2 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC19.65■□□□□ 0.74
Trim3Q9R1R2 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC19.65■□□□□ 0.74
Trim3Q9R1R2 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC19.65■□□□□ 0.74
Trim3Q9R1R2 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Trim3Q9R1R2 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim3Q9R1R2 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim3Q9R1R2 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Trim3Q9R1R2 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim3Q9R1R2 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC19.65■□□□□ 0.74
Trim3Q9R1R2 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim3Q9R1R2 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
Trim3Q9R1R2 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC19.65■□□□□ 0.74
Trim3Q9R1R2 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.74
Trim3Q9R1R2 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC19.64■□□□□ 0.73
Trim3Q9R1R2 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Trim3Q9R1R2 Gm32051-202ENSMUST00000197905 2385 ntBASIC19.63■□□□□ 0.73
Trim3Q9R1R2 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim3Q9R1R2 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim3Q9R1R2 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC19.63■□□□□ 0.73
Trim3Q9R1R2 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim3Q9R1R2 Gm43006-201ENSMUST00000197702 1602 ntBASIC19.63■□□□□ 0.73
Trim3Q9R1R2 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Trim3Q9R1R2 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim3Q9R1R2 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC19.63■□□□□ 0.73
Trim3Q9R1R2 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Trim3Q9R1R2 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim3Q9R1R2 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim3Q9R1R2 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim3Q9R1R2 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Trim3Q9R1R2 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC19.62■□□□□ 0.73
Trim3Q9R1R2 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
Trim3Q9R1R2 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC19.62■□□□□ 0.73
Trim3Q9R1R2 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim3Q9R1R2 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Trim3Q9R1R2 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Trim3Q9R1R2 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC19.61■□□□□ 0.73
Trim3Q9R1R2 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
Trim3Q9R1R2 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim3Q9R1R2 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
Trim3Q9R1R2 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Trim3Q9R1R2 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Trim3Q9R1R2 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Trim3Q9R1R2 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trim3Q9R1R2 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trim3Q9R1R2 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trim3Q9R1R2 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trim3Q9R1R2 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
Trim3Q9R1R2 Nt5m-201ENSMUST00000102695 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trim3Q9R1R2 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trim3Q9R1R2 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trim3Q9R1R2 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Trim3Q9R1R2 Gm15546-201ENSMUST00000122095 826 ntBASIC19.59■□□□□ 0.73
Trim3Q9R1R2 Gm5522-201ENSMUST00000189483 1242 ntBASIC19.59■□□□□ 0.73
Trim3Q9R1R2 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
Trim3Q9R1R2 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC19.59■□□□□ 0.73
Trim3Q9R1R2 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Trim3Q9R1R2 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Trim3Q9R1R2 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Trim3Q9R1R2 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC19.58■□□□□ 0.73
Trim3Q9R1R2 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Trim3Q9R1R2 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Trim3Q9R1R2 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
Trim3Q9R1R2 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Trim3Q9R1R2 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Trim3Q9R1R2 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC19.57■□□□□ 0.72
Trim3Q9R1R2 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trim3Q9R1R2 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trim3Q9R1R2 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
Trim3Q9R1R2 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC19.57■□□□□ 0.72
Trim3Q9R1R2 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trim3Q9R1R2 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
Trim3Q9R1R2 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 16.5 ms