Protein–RNA interactions for Protein: Q8C0D0

Trub1, Probable tRNA pseudouridine synthase 1, mousemouse

Known RBP Predictions only

Length 338 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trub1Q8C0D0 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC21.8■■□□□ 1.08
Trub1Q8C0D0 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Trub1Q8C0D0 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC21.79■■□□□ 1.08
Trub1Q8C0D0 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Trub1Q8C0D0 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
Trub1Q8C0D0 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Trub1Q8C0D0 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
Trub1Q8C0D0 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC21.79■■□□□ 1.08
Trub1Q8C0D0 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Trub1Q8C0D0 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Trub1Q8C0D0 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Trub1Q8C0D0 AC116713.1-201ENSMUST00000215074 430 ntBASIC21.79■■□□□ 1.08
Trub1Q8C0D0 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Trub1Q8C0D0 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Trub1Q8C0D0 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Trub1Q8C0D0 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Trub1Q8C0D0 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Trub1Q8C0D0 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Trub1Q8C0D0 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Trub1Q8C0D0 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Trub1Q8C0D0 AC164883.3-201ENSMUST00000227396 1774 ntBASIC21.78■■□□□ 1.08
Trub1Q8C0D0 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Trub1Q8C0D0 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Trub1Q8C0D0 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
Trub1Q8C0D0 Gm12504-201ENSMUST00000120860 2231 ntBASIC21.78■■□□□ 1.08
Trub1Q8C0D0 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
Trub1Q8C0D0 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
Trub1Q8C0D0 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
Trub1Q8C0D0 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Trub1Q8C0D0 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC21.77■■□□□ 1.08
Trub1Q8C0D0 Gm8093-201ENSMUST00000128935 1892 ntBASIC21.77■■□□□ 1.08
Trub1Q8C0D0 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC21.77■■□□□ 1.07
Trub1Q8C0D0 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.07
Trub1Q8C0D0 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trub1Q8C0D0 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trub1Q8C0D0 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC21.76■■□□□ 1.07
Trub1Q8C0D0 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trub1Q8C0D0 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Trub1Q8C0D0 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trub1Q8C0D0 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Trub1Q8C0D0 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC21.76■■□□□ 1.07
Trub1Q8C0D0 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Trub1Q8C0D0 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trub1Q8C0D0 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trub1Q8C0D0 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trub1Q8C0D0 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC21.75■■□□□ 1.07
Trub1Q8C0D0 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
Trub1Q8C0D0 Gm43566-201ENSMUST00000196851 808 ntBASIC21.74■■□□□ 1.07
Trub1Q8C0D0 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
Trub1Q8C0D0 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trub1Q8C0D0 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC21.74■■□□□ 1.07
Trub1Q8C0D0 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trub1Q8C0D0 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trub1Q8C0D0 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
Trub1Q8C0D0 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
Trub1Q8C0D0 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Trub1Q8C0D0 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trub1Q8C0D0 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trub1Q8C0D0 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trub1Q8C0D0 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trub1Q8C0D0 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trub1Q8C0D0 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC21.72■■□□□ 1.07
Trub1Q8C0D0 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
Trub1Q8C0D0 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
Trub1Q8C0D0 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
Trub1Q8C0D0 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trub1Q8C0D0 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trub1Q8C0D0 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Trub1Q8C0D0 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC21.71■■□□□ 1.07
Trub1Q8C0D0 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC21.71■■□□□ 1.07
Trub1Q8C0D0 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trub1Q8C0D0 Gm6277-202ENSMUST00000224036 2779 ntBASIC21.7■■□□□ 1.07
Trub1Q8C0D0 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Trub1Q8C0D0 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Trub1Q8C0D0 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Trub1Q8C0D0 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Trub1Q8C0D0 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Trub1Q8C0D0 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC21.69■■□□□ 1.06
Trub1Q8C0D0 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Trub1Q8C0D0 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Trub1Q8C0D0 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Trub1Q8C0D0 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Trub1Q8C0D0 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Trub1Q8C0D0 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC21.68■■□□□ 1.06
Trub1Q8C0D0 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Trub1Q8C0D0 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Trub1Q8C0D0 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Trub1Q8C0D0 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Trub1Q8C0D0 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Trub1Q8C0D0 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Trub1Q8C0D0 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Trub1Q8C0D0 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Trub1Q8C0D0 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Trub1Q8C0D0 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Trub1Q8C0D0 Gm16464-201ENSMUST00000117815 1095 ntBASIC21.67■■□□□ 1.06
Trub1Q8C0D0 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
Trub1Q8C0D0 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Trub1Q8C0D0 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Trub1Q8C0D0 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC21.66■■□□□ 1.06
Trub1Q8C0D0 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC21.66■■□□□ 1.06
Retrieved 100 of 76,532 protein–RNA pairs in 48.1 ms