Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Ccdc40Q8BI79 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Ccdc40Q8BI79 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Ccdc40Q8BI79 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC21.77■■□□□ 1.08
Ccdc40Q8BI79 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Ccdc40Q8BI79 AC124392.1-201ENSMUST00000225172 5324 ntBASIC21.77■■□□□ 1.08
Ccdc40Q8BI79 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Ccdc40Q8BI79 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Ccdc40Q8BI79 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Ccdc40Q8BI79 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.07
Ccdc40Q8BI79 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
Ccdc40Q8BI79 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Ccdc40Q8BI79 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Ccdc40Q8BI79 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC21.76■■□□□ 1.07
Ccdc40Q8BI79 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
Ccdc40Q8BI79 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Ccdc40Q8BI79 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
Ccdc40Q8BI79 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Ccdc40Q8BI79 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Ccdc40Q8BI79 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Ccdc40Q8BI79 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
Ccdc40Q8BI79 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
Ccdc40Q8BI79 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Ccdc40Q8BI79 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC21.75■■□□□ 1.07
Ccdc40Q8BI79 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Ccdc40Q8BI79 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
Ccdc40Q8BI79 Gm26766-202ENSMUST00000227544 2347 ntBASIC21.75■■□□□ 1.07
Ccdc40Q8BI79 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Ccdc40Q8BI79 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Ccdc40Q8BI79 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Ccdc40Q8BI79 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Ccdc40Q8BI79 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC21.73■■□□□ 1.07
Ccdc40Q8BI79 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Ccdc40Q8BI79 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Ccdc40Q8BI79 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Ccdc40Q8BI79 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Ccdc40Q8BI79 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
Ccdc40Q8BI79 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Ccdc40Q8BI79 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Ccdc40Q8BI79 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC21.73■■□□□ 1.07
Ccdc40Q8BI79 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Ccdc40Q8BI79 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Ccdc40Q8BI79 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Ccdc40Q8BI79 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC21.72■■□□□ 1.07
Ccdc40Q8BI79 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
Ccdc40Q8BI79 Gm10616-201ENSMUST00000205285 2127 ntBASIC21.72■■□□□ 1.07
Ccdc40Q8BI79 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
Ccdc40Q8BI79 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Ccdc40Q8BI79 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Ccdc40Q8BI79 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC21.72■■□□□ 1.07
Ccdc40Q8BI79 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Ccdc40Q8BI79 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Ccdc40Q8BI79 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Ccdc40Q8BI79 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
Ccdc40Q8BI79 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Ccdc40Q8BI79 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC21.71■■□□□ 1.07
Ccdc40Q8BI79 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Ccdc40Q8BI79 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Ccdc40Q8BI79 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC21.71■■□□□ 1.07
Ccdc40Q8BI79 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC21.71■■□□□ 1.07
Ccdc40Q8BI79 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Ccdc40Q8BI79 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Ccdc40Q8BI79 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC21.7■■□□□ 1.06
Ccdc40Q8BI79 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC21.69■■□□□ 1.06
Ccdc40Q8BI79 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Ccdc40Q8BI79 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Ccdc40Q8BI79 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Ccdc40Q8BI79 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Ccdc40Q8BI79 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Ccdc40Q8BI79 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Ccdc40Q8BI79 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC21.69■■□□□ 1.06
Ccdc40Q8BI79 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Ccdc40Q8BI79 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Ccdc40Q8BI79 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC21.68■■□□□ 1.06
Ccdc40Q8BI79 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC21.68■■□□□ 1.06
Ccdc40Q8BI79 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC21.68■■□□□ 1.06
Ccdc40Q8BI79 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Ccdc40Q8BI79 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Ccdc40Q8BI79 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Ccdc40Q8BI79 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC21.67■■□□□ 1.06
Ccdc40Q8BI79 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Ccdc40Q8BI79 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Ccdc40Q8BI79 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Ccdc40Q8BI79 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC21.66■■□□□ 1.06
Ccdc40Q8BI79 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Ccdc40Q8BI79 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Ccdc40Q8BI79 Nt5m-201ENSMUST00000102695 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Ccdc40Q8BI79 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC21.66■■□□□ 1.06
Ccdc40Q8BI79 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC21.66■■□□□ 1.06
Ccdc40Q8BI79 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Ccdc40Q8BI79 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Ccdc40Q8BI79 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Ccdc40Q8BI79 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Ccdc40Q8BI79 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
Ccdc40Q8BI79 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
Ccdc40Q8BI79 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC21.65■■□□□ 1.06
Ccdc40Q8BI79 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Ccdc40Q8BI79 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Ccdc40Q8BI79 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Ccdc40Q8BI79 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Retrieved 100 of 76,532 protein–RNA pairs in 21.5 ms