Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ubfd1Q78JW9 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC20.56■□□□□ 0.88
Ubfd1Q78JW9 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ubfd1Q78JW9 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Ubfd1Q78JW9 Gm9847-201ENSMUST00000052528 599 ntBASIC20.56■□□□□ 0.88
Ubfd1Q78JW9 Gm13241-201ENSMUST00000094493 780 ntBASIC20.56■□□□□ 0.88
Ubfd1Q78JW9 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ubfd1Q78JW9 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Ubfd1Q78JW9 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Ubfd1Q78JW9 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Ubfd1Q78JW9 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ubfd1Q78JW9 Gm12922-201ENSMUST00000120626 809 ntBASIC20.55■□□□□ 0.88
Ubfd1Q78JW9 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Ubfd1Q78JW9 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC20.55■□□□□ 0.88
Ubfd1Q78JW9 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ubfd1Q78JW9 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
Ubfd1Q78JW9 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ubfd1Q78JW9 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ubfd1Q78JW9 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Ubfd1Q78JW9 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Ubfd1Q78JW9 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ubfd1Q78JW9 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ubfd1Q78JW9 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Ubfd1Q78JW9 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ubfd1Q78JW9 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ubfd1Q78JW9 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ubfd1Q78JW9 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Ubfd1Q78JW9 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC20.53■□□□□ 0.88
Ubfd1Q78JW9 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC20.53■□□□□ 0.88
Ubfd1Q78JW9 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ubfd1Q78JW9 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
Ubfd1Q78JW9 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC20.53■□□□□ 0.88
Ubfd1Q78JW9 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ubfd1Q78JW9 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
Ubfd1Q78JW9 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Ubfd1Q78JW9 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Ubfd1Q78JW9 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Ubfd1Q78JW9 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC20.52■□□□□ 0.88
Ubfd1Q78JW9 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
Ubfd1Q78JW9 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Ubfd1Q78JW9 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.87
Ubfd1Q78JW9 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Ubfd1Q78JW9 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.87
Ubfd1Q78JW9 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC20.52■□□□□ 0.87
Ubfd1Q78JW9 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ubfd1Q78JW9 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
Ubfd1Q78JW9 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ubfd1Q78JW9 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ubfd1Q78JW9 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ubfd1Q78JW9 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ubfd1Q78JW9 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Ubfd1Q78JW9 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Ubfd1Q78JW9 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ubfd1Q78JW9 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ubfd1Q78JW9 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ubfd1Q78JW9 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Ubfd1Q78JW9 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC20.5■□□□□ 0.87
Ubfd1Q78JW9 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ubfd1Q78JW9 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ubfd1Q78JW9 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Ubfd1Q78JW9 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC20.49■□□□□ 0.87
Ubfd1Q78JW9 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ubfd1Q78JW9 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Ubfd1Q78JW9 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC20.49■□□□□ 0.87
Ubfd1Q78JW9 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Ubfd1Q78JW9 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
Ubfd1Q78JW9 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ubfd1Q78JW9 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ubfd1Q78JW9 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC20.48■□□□□ 0.87
Ubfd1Q78JW9 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ubfd1Q78JW9 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC20.48■□□□□ 0.87
Ubfd1Q78JW9 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ubfd1Q78JW9 Gm43034-201ENSMUST00000198678 1364 ntBASIC20.47■□□□□ 0.87
Ubfd1Q78JW9 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ubfd1Q78JW9 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC20.47■□□□□ 0.87
Ubfd1Q78JW9 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ubfd1Q78JW9 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Ubfd1Q78JW9 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Ubfd1Q78JW9 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ubfd1Q78JW9 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ubfd1Q78JW9 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC20.47■□□□□ 0.87
Ubfd1Q78JW9 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ubfd1Q78JW9 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
Ubfd1Q78JW9 Dyrk1b-202ENSMUST00000172467 2523 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Ubfd1Q78JW9 Dyrk1b-201ENSMUST00000085901 2534 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ubfd1Q78JW9 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC20.46■□□□□ 0.87
Ubfd1Q78JW9 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC20.46■□□□□ 0.87
Ubfd1Q78JW9 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC20.46■□□□□ 0.87
Ubfd1Q78JW9 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ubfd1Q78JW9 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC20.46■□□□□ 0.87
Ubfd1Q78JW9 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ubfd1Q78JW9 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ubfd1Q78JW9 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ubfd1Q78JW9 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ubfd1Q78JW9 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ubfd1Q78JW9 Gm15039-201ENSMUST00000118914 875 ntBASIC20.45■□□□□ 0.86
Ubfd1Q78JW9 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC20.45■□□□□ 0.86
Ubfd1Q78JW9 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC20.45■□□□□ 0.86
Ubfd1Q78JW9 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ubfd1Q78JW9 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 58.9 ms