Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC19.31■□□□□ 0.68
Usf1Q61069 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Usf1Q61069 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Usf1Q61069 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Usf1Q61069 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Usf1Q61069 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Usf1Q61069 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Usf1Q61069 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC19.3■□□□□ 0.68
Usf1Q61069 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC19.3■□□□□ 0.68
Usf1Q61069 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Usf1Q61069 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Usf1Q61069 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Usf1Q61069 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
Usf1Q61069 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Usf1Q61069 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Usf1Q61069 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Usf1Q61069 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Usf1Q61069 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Usf1Q61069 AC164629.5-201ENSMUST00000220387 632 ntBASIC19.29■□□□□ 0.68
Usf1Q61069 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Usf1Q61069 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Usf1Q61069 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usf1Q61069 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC19.28■□□□□ 0.68
Usf1Q61069 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC19.28■□□□□ 0.68
Usf1Q61069 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC19.28■□□□□ 0.68
Usf1Q61069 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usf1Q61069 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usf1Q61069 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Usf1Q61069 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Usf1Q61069 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Usf1Q61069 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Usf1Q61069 Gm8493-201ENSMUST00000196881 489 ntBASIC19.27■□□□□ 0.68
Usf1Q61069 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Usf1Q61069 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
Usf1Q61069 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Usf1Q61069 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
Usf1Q61069 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Usf1Q61069 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usf1Q61069 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC19.26■□□□□ 0.67
Usf1Q61069 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Usf1Q61069 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usf1Q61069 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usf1Q61069 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usf1Q61069 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Usf1Q61069 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Usf1Q61069 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC19.26■□□□□ 0.67
Usf1Q61069 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usf1Q61069 Gm5874-201ENSMUST00000096101 508 ntBASIC19.26■□□□□ 0.67
Usf1Q61069 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usf1Q61069 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Usf1Q61069 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usf1Q61069 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Usf1Q61069 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC19.25■□□□□ 0.67
Usf1Q61069 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Usf1Q61069 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usf1Q61069 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usf1Q61069 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Usf1Q61069 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Usf1Q61069 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Usf1Q61069 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC19.24■□□□□ 0.67
Usf1Q61069 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usf1Q61069 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC19.24■□□□□ 0.67
Usf1Q61069 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usf1Q61069 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Usf1Q61069 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Usf1Q61069 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Usf1Q61069 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC19.23■□□□□ 0.67
Usf1Q61069 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC19.23■□□□□ 0.67
Usf1Q61069 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Usf1Q61069 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Usf1Q61069 Gm6934-201ENSMUST00000194780 1905 ntBASIC19.23■□□□□ 0.67
Usf1Q61069 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC19.22■□□□□ 0.67
Usf1Q61069 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usf1Q61069 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Usf1Q61069 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usf1Q61069 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usf1Q61069 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usf1Q61069 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Usf1Q61069 AC116713.1-201ENSMUST00000215074 430 ntBASIC19.22■□□□□ 0.67
Usf1Q61069 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usf1Q61069 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usf1Q61069 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC19.21■□□□□ 0.67
Usf1Q61069 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Usf1Q61069 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usf1Q61069 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usf1Q61069 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
Usf1Q61069 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usf1Q61069 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Usf1Q61069 Krt8-ps-201ENSMUST00000208495 945 ntBASIC19.21■□□□□ 0.67
Usf1Q61069 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Usf1Q61069 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usf1Q61069 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Usf1Q61069 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usf1Q61069 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usf1Q61069 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usf1Q61069 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC19.2■□□□□ 0.66
Usf1Q61069 Wdr70-203ENSMUST00000227371 1130 ntBASIC19.2■□□□□ 0.66
Usf1Q61069 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usf1Q61069 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usf1Q61069 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms