Protein–RNA interactions for Protein: Q5NCP0

Rnf43, E3 ubiquitin-protein ligase RNF43, mousemouse

Predictions only

Length 784 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf43Q5NCP0 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Rnf43Q5NCP0 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Rnf43Q5NCP0 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC21.49■■□□□ 1.03
Rnf43Q5NCP0 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Rnf43Q5NCP0 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC21.48■■□□□ 1.03
Rnf43Q5NCP0 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Rnf43Q5NCP0 Gm9207-201ENSMUST00000198773 1115 ntBASIC21.48■■□□□ 1.03
Rnf43Q5NCP0 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
Rnf43Q5NCP0 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Rnf43Q5NCP0 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Rnf43Q5NCP0 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Rnf43Q5NCP0 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC21.47■■□□□ 1.03
Rnf43Q5NCP0 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Rnf43Q5NCP0 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Rnf43Q5NCP0 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Rnf43Q5NCP0 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Rnf43Q5NCP0 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Rnf43Q5NCP0 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Rnf43Q5NCP0 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Rnf43Q5NCP0 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Rnf43Q5NCP0 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Rnf43Q5NCP0 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Rnf43Q5NCP0 Gm6934-201ENSMUST00000194780 1905 ntBASIC21.45■■□□□ 1.02
Rnf43Q5NCP0 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Rnf43Q5NCP0 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Rnf43Q5NCP0 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Rnf43Q5NCP0 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Rnf43Q5NCP0 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Rnf43Q5NCP0 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC21.45■■□□□ 1.02
Rnf43Q5NCP0 Gm8495-201ENSMUST00000188740 694 ntBASIC21.45■■□□□ 1.02
Rnf43Q5NCP0 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC21.45■■□□□ 1.02
Rnf43Q5NCP0 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
Rnf43Q5NCP0 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Rnf43Q5NCP0 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC21.45■■□□□ 1.02
Rnf43Q5NCP0 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Rnf43Q5NCP0 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
Rnf43Q5NCP0 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
Rnf43Q5NCP0 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Rnf43Q5NCP0 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC21.44■■□□□ 1.02
Rnf43Q5NCP0 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC21.44■■□□□ 1.02
Rnf43Q5NCP0 AC116713.1-201ENSMUST00000215074 430 ntBASIC21.44■■□□□ 1.02
Rnf43Q5NCP0 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC21.44■■□□□ 1.02
Rnf43Q5NCP0 Slc35b2-207ENSMUST00000226086 850 ntBASIC21.44■■□□□ 1.02
Rnf43Q5NCP0 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
Rnf43Q5NCP0 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Rnf43Q5NCP0 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Rnf43Q5NCP0 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
Rnf43Q5NCP0 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
Rnf43Q5NCP0 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
Rnf43Q5NCP0 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Rnf43Q5NCP0 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
Rnf43Q5NCP0 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Rnf43Q5NCP0 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Rnf43Q5NCP0 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Rnf43Q5NCP0 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Rnf43Q5NCP0 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC21.43■■□□□ 1.02
Rnf43Q5NCP0 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Rnf43Q5NCP0 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC21.43■■□□□ 1.02
Rnf43Q5NCP0 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Rnf43Q5NCP0 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC21.42■■□□□ 1.02
Rnf43Q5NCP0 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC21.42■■□□□ 1.02
Rnf43Q5NCP0 Flvcr1-202ENSMUST00000191946 1216 ntBASIC21.42■■□□□ 1.02
Rnf43Q5NCP0 Gm5297-201ENSMUST00000198555 1171 ntBASIC21.42■■□□□ 1.02
Rnf43Q5NCP0 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC21.42■■□□□ 1.02
Rnf43Q5NCP0 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Rnf43Q5NCP0 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Rnf43Q5NCP0 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
Rnf43Q5NCP0 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC21.41■■□□□ 1.02
Rnf43Q5NCP0 Gm18284-201ENSMUST00000172604 624 ntBASIC21.41■■□□□ 1.02
Rnf43Q5NCP0 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
Rnf43Q5NCP0 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Rnf43Q5NCP0 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
Rnf43Q5NCP0 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Rnf43Q5NCP0 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC21.41■■□□□ 1.02
Rnf43Q5NCP0 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Rnf43Q5NCP0 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Rnf43Q5NCP0 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Rnf43Q5NCP0 Gm9870-201ENSMUST00000063874 645 ntBASIC21.4■■□□□ 1.02
Rnf43Q5NCP0 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Rnf43Q5NCP0 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Rnf43Q5NCP0 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Rnf43Q5NCP0 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Rnf43Q5NCP0 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC21.39■■□□□ 1.02
Rnf43Q5NCP0 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Rnf43Q5NCP0 Gm6139-201ENSMUST00000079261 882 ntBASIC21.39■■□□□ 1.01
Rnf43Q5NCP0 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Rnf43Q5NCP0 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
Rnf43Q5NCP0 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC21.38■■□□□ 1.01
Rnf43Q5NCP0 Gm2011-201ENSMUST00000203124 1263 ntBASIC21.38■■□□□ 1.01
Rnf43Q5NCP0 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Rnf43Q5NCP0 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Rnf43Q5NCP0 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
Rnf43Q5NCP0 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
Rnf43Q5NCP0 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC21.38■■□□□ 1.01
Rnf43Q5NCP0 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
Rnf43Q5NCP0 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC21.37■■□□□ 1.01
Rnf43Q5NCP0 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Rnf43Q5NCP0 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Rnf43Q5NCP0 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Rnf43Q5NCP0 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC21.37■■□□□ 1.01
Retrieved 100 of 76,532 protein–RNA pairs in 22.6 ms