Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col28a1Q2UY11 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col28a1Q2UY11 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
Col28a1Q2UY11 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col28a1Q2UY11 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col28a1Q2UY11 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col28a1Q2UY11 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col28a1Q2UY11 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col28a1Q2UY11 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col28a1Q2UY11 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC20.3■□□□□ 0.84
Col28a1Q2UY11 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC20.3■□□□□ 0.84
Col28a1Q2UY11 Gm5067-201ENSMUST00000170449 1009 ntBASIC20.3■□□□□ 0.84
Col28a1Q2UY11 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Col28a1Q2UY11 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col28a1Q2UY11 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col28a1Q2UY11 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC20.3■□□□□ 0.84
Col28a1Q2UY11 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col28a1Q2UY11 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col28a1Q2UY11 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col28a1Q2UY11 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Col28a1Q2UY11 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col28a1Q2UY11 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Col28a1Q2UY11 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Col28a1Q2UY11 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Col28a1Q2UY11 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col28a1Q2UY11 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col28a1Q2UY11 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col28a1Q2UY11 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Col28a1Q2UY11 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col28a1Q2UY11 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col28a1Q2UY11 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC20.28■□□□□ 0.84
Col28a1Q2UY11 AC151971.4-201ENSMUST00000214717 704 ntBASIC20.28■□□□□ 0.84
Col28a1Q2UY11 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Col28a1Q2UY11 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col28a1Q2UY11 Gm43403-201ENSMUST00000198011 1786 ntBASIC20.28■□□□□ 0.84
Col28a1Q2UY11 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Col28a1Q2UY11 Kdm3b-204ENSMUST00000224715 2032 ntBASIC20.27■□□□□ 0.84
Col28a1Q2UY11 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
Col28a1Q2UY11 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC20.27■□□□□ 0.84
Col28a1Q2UY11 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col28a1Q2UY11 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.83
Col28a1Q2UY11 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
Col28a1Q2UY11 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col28a1Q2UY11 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col28a1Q2UY11 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
Col28a1Q2UY11 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Col28a1Q2UY11 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col28a1Q2UY11 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col28a1Q2UY11 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col28a1Q2UY11 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col28a1Q2UY11 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col28a1Q2UY11 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col28a1Q2UY11 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col28a1Q2UY11 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col28a1Q2UY11 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col28a1Q2UY11 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col28a1Q2UY11 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Col28a1Q2UY11 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col28a1Q2UY11 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Col28a1Q2UY11 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col28a1Q2UY11 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Col28a1Q2UY11 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC20.24■□□□□ 0.83
Col28a1Q2UY11 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col28a1Q2UY11 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
Col28a1Q2UY11 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Col28a1Q2UY11 Aktip-205ENSMUST00000125257 2079 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col28a1Q2UY11 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col28a1Q2UY11 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col28a1Q2UY11 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC20.23■□□□□ 0.83
Col28a1Q2UY11 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col28a1Q2UY11 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col28a1Q2UY11 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col28a1Q2UY11 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC20.23■□□□□ 0.83
Col28a1Q2UY11 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Col28a1Q2UY11 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC20.23■□□□□ 0.83
Col28a1Q2UY11 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC20.22■□□□□ 0.83
Col28a1Q2UY11 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Col28a1Q2UY11 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Col28a1Q2UY11 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
Col28a1Q2UY11 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col28a1Q2UY11 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col28a1Q2UY11 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col28a1Q2UY11 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Col28a1Q2UY11 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col28a1Q2UY11 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col28a1Q2UY11 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Col28a1Q2UY11 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Col28a1Q2UY11 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col28a1Q2UY11 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Col28a1Q2UY11 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col28a1Q2UY11 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col28a1Q2UY11 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Col28a1Q2UY11 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Col28a1Q2UY11 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Col28a1Q2UY11 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col28a1Q2UY11 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC20.2■□□□□ 0.82
Col28a1Q2UY11 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC20.2■□□□□ 0.82
Col28a1Q2UY11 Gm10420-201ENSMUST00000121713 882 ntBASIC20.2■□□□□ 0.82
Col28a1Q2UY11 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col28a1Q2UY11 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 94.7 ms