Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Hmgb3O54879 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Hmgb3O54879 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
Hmgb3O54879 AC122335.2-201ENSMUST00000213901 6181 ntBASIC17.4■□□□□ 0.38
Hmgb3O54879 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Hmgb3O54879 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
Hmgb3O54879 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC17.39■□□□□ 0.38
Hmgb3O54879 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC17.39■□□□□ 0.38
Hmgb3O54879 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Hmgb3O54879 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Hmgb3O54879 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
Hmgb3O54879 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Hmgb3O54879 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Hmgb3O54879 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Hmgb3O54879 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Hmgb3O54879 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Hmgb3O54879 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Hmgb3O54879 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Hmgb3O54879 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Hmgb3O54879 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Hmgb3O54879 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC17.38■□□□□ 0.37
Hmgb3O54879 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Hmgb3O54879 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Hmgb3O54879 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Hmgb3O54879 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC17.38■□□□□ 0.37
Hmgb3O54879 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Hmgb3O54879 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Hmgb3O54879 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Hmgb3O54879 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Hmgb3O54879 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
Hmgb3O54879 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Hmgb3O54879 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Hmgb3O54879 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
Hmgb3O54879 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Hmgb3O54879 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Hmgb3O54879 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Hmgb3O54879 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Hmgb3O54879 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Hmgb3O54879 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Hmgb3O54879 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Hmgb3O54879 Gm43006-201ENSMUST00000197702 1602 ntBASIC17.36■□□□□ 0.37
Hmgb3O54879 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Hmgb3O54879 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Hmgb3O54879 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Hmgb3O54879 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Hmgb3O54879 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC17.35■□□□□ 0.37
Hmgb3O54879 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Hmgb3O54879 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Hmgb3O54879 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Hmgb3O54879 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Hmgb3O54879 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Hmgb3O54879 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Hmgb3O54879 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC17.35■□□□□ 0.37
Hmgb3O54879 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Hmgb3O54879 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Hmgb3O54879 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
Hmgb3O54879 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Hmgb3O54879 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC17.34■□□□□ 0.37
Hmgb3O54879 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Hmgb3O54879 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Hmgb3O54879 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Hmgb3O54879 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Hmgb3O54879 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Hmgb3O54879 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Hmgb3O54879 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Hmgb3O54879 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Hmgb3O54879 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Hmgb3O54879 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Hmgb3O54879 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Hmgb3O54879 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Hmgb3O54879 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
Hmgb3O54879 Gm22567-201ENSMUST00000175542 342 ntBASIC17.33■□□□□ 0.36
Hmgb3O54879 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Hmgb3O54879 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Hmgb3O54879 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Hmgb3O54879 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Hmgb3O54879 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Hmgb3O54879 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Hmgb3O54879 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Hmgb3O54879 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Hmgb3O54879 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC17.32■□□□□ 0.36
Hmgb3O54879 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC17.32■□□□□ 0.36
Hmgb3O54879 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Hmgb3O54879 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Hmgb3O54879 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Hmgb3O54879 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Hmgb3O54879 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Hmgb3O54879 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC17.31■□□□□ 0.36
Hmgb3O54879 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Hmgb3O54879 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Hmgb3O54879 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC17.31■□□□□ 0.36
Hmgb3O54879 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
Hmgb3O54879 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Hmgb3O54879 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
Hmgb3O54879 Ankib1-201ENSMUST00000043551 6426 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Hmgb3O54879 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Hmgb3O54879 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Hmgb3O54879 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Hmgb3O54879 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Hmgb3O54879 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 12.1 ms