Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
Brf1Q8CFK2 Gm20605-201ENSMUST00000177545 4464 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
Brf1Q8CFK2 Chodl-202ENSMUST00000069148 2051 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Brf1Q8CFK2 Ints1-201ENSMUST00000072607 7102 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
Brf1Q8CFK2 Plagl1-202ENSMUST00000121646 5260 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Brf1Q8CFK2 Olfr322-202ENSMUST00000213232 4632 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
Brf1Q8CFK2 Arvcf-201ENSMUST00000090103 4620 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
Brf1Q8CFK2 Slc38a10-216ENSMUST00000179094 4052 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
Brf1Q8CFK2 Atxn10-201ENSMUST00000163242 2425 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Brf1Q8CFK2 Rhox9-202ENSMUST00000170643 2422 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Brf1Q8CFK2 Pepd-201ENSMUST00000075068 1881 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Brf1Q8CFK2 Asxl1-201ENSMUST00000109790 6968 ntAPPRIS P2 TSL 5 BASIC15.42■□□□□ 0.06
Brf1Q8CFK2 Dync1i1-204ENSMUST00000115559 2599 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
Brf1Q8CFK2 Ntsr1-202ENSMUST00000170448 2594 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Brf1Q8CFK2 Cog1-201ENSMUST00000018805 3935 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Brf1Q8CFK2 Adam32-202ENSMUST00000121438 2450 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
Brf1Q8CFK2 Sirpa-214ENSMUST00000179001 3812 ntAPPRIS P3 TSL 5 BASIC15.41■□□□□ 0.06
Brf1Q8CFK2 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Brf1Q8CFK2 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Brf1Q8CFK2 AC131068.2-201ENSMUST00000226175 1453 ntBASIC15.41■□□□□ 0.06
Brf1Q8CFK2 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Brf1Q8CFK2 4930428O21Rik-201ENSMUST00000198537 1740 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Brf1Q8CFK2 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Brf1Q8CFK2 Pygm-201ENSMUST00000035269 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Brf1Q8CFK2 Nek1-201ENSMUST00000034065 5401 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
Brf1Q8CFK2 Per1-206ENSMUST00000166748 4636 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Brf1Q8CFK2 Tepsin-201ENSMUST00000026442 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Brf1Q8CFK2 Ighv7-3-201ENSMUST00000103461 361 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
Brf1Q8CFK2 Adamtsl1-204ENSMUST00000120678 977 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Brf1Q8CFK2 1700012C14Rik-201ENSMUST00000132023 498 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Brf1Q8CFK2 Snora78-201ENSMUST00000158630 128 ntBASIC15.41■□□□□ 0.06
Brf1Q8CFK2 Gm16296-201ENSMUST00000159905 325 ntBASIC15.41■□□□□ 0.06
Brf1Q8CFK2 Aprt-203ENSMUST00000211823 590 ntTSL 3 BASIC15.41■□□□□ 0.06
Brf1Q8CFK2 AC166349.1-201ENSMUST00000220866 695 ntBASIC15.41■□□□□ 0.06
Brf1Q8CFK2 Olfr272-201ENSMUST00000051600 962 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
Brf1Q8CFK2 Gm10244-201ENSMUST00000090237 830 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Brf1Q8CFK2 Serpinb13-201ENSMUST00000027564 1607 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Brf1Q8CFK2 Ubr7-201ENSMUST00000046404 3261 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Brf1Q8CFK2 Gpd2-201ENSMUST00000028167 5620 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Brf1Q8CFK2 Cacna2d1-209ENSMUST00000199704 3861 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Brf1Q8CFK2 Slc29a2-201ENSMUST00000025826 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Brf1Q8CFK2 Gm38385-201ENSMUST00000194454 2351 ntBASIC15.41■□□□□ 0.06
Brf1Q8CFK2 Gm30725-201ENSMUST00000195170 1419 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Brf1Q8CFK2 Myh14-203ENSMUST00000107900 6400 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
Brf1Q8CFK2 Ablim1-202ENSMUST00000099294 6232 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
Brf1Q8CFK2 Spock1-206ENSMUST00000189373 3128 ntTSL 5 BASIC15.41■□□□□ 0.06
Brf1Q8CFK2 Gm8228-201ENSMUST00000189949 2192 ntBASIC15.41■□□□□ 0.06
Brf1Q8CFK2 Zbtb7b-203ENSMUST00000107433 3650 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Brf1Q8CFK2 Slc16a2-201ENSMUST00000042664 4152 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Brf1Q8CFK2 Gm20633-201ENSMUST00000176742 2831 ntBASIC15.4■□□□□ 0.06
Brf1Q8CFK2 Rasa3-201ENSMUST00000117551 4404 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Brf1Q8CFK2 Slc13a5-201ENSMUST00000021161 3329 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Brf1Q8CFK2 Pitpnm2-205ENSMUST00000161273 6792 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
Brf1Q8CFK2 Ugt1a2-201ENSMUST00000049289 2211 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Brf1Q8CFK2 Prex1-203ENSMUST00000109246 2386 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Brf1Q8CFK2 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Brf1Q8CFK2 Tpm3-rs7-201ENSMUST00000072359 2147 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
Brf1Q8CFK2 Dhtkd1-202ENSMUST00000095147 5480 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
Brf1Q8CFK2 Faap20-202ENSMUST00000105627 710 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
Brf1Q8CFK2 Phlda2-201ENSMUST00000010904 757 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Brf1Q8CFK2 Pkig-203ENSMUST00000109400 1059 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Brf1Q8CFK2 Gm9431-201ENSMUST00000119765 1051 ntBASIC15.4■□□□□ 0.06
Brf1Q8CFK2 Gm12167-201ENSMUST00000148132 578 ntTSL 2 BASIC15.4■□□□□ 0.06
Brf1Q8CFK2 AC165260.3-202ENSMUST00000224550 1031 ntBASIC15.4■□□□□ 0.06
Brf1Q8CFK2 1500011B03Rik-201ENSMUST00000061251 579 ntAPPRIS P5 TSL 1 (best) BASIC15.4■□□□□ 0.06
Brf1Q8CFK2 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
Brf1Q8CFK2 Urgcp-204ENSMUST00000120306 3972 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Brf1Q8CFK2 Adi1-201ENSMUST00000020957 1652 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Brf1Q8CFK2 Rab11a-208ENSMUST00000172298 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Brf1Q8CFK2 Epha5-204ENSMUST00000113401 5158 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Brf1Q8CFK2 Pfkfb3-213ENSMUST00000171188 2058 ntTSL 5 BASIC15.4■□□□□ 0.06
Brf1Q8CFK2 Nfatc4-201ENSMUST00000024179 3267 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
Brf1Q8CFK2 Nrp2-203ENSMUST00000075144 6723 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Brf1Q8CFK2 Llgl2-201ENSMUST00000103032 3551 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
Brf1Q8CFK2 Pole2-201ENSMUST00000021359 1706 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Brf1Q8CFK2 Actn1-201ENSMUST00000021554 3734 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Brf1Q8CFK2 Vps4b-202ENSMUST00000112736 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Brf1Q8CFK2 Fcrls-201ENSMUST00000090986 2273 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Brf1Q8CFK2 Ptgr2-208ENSMUST00000147363 1869 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Brf1Q8CFK2 Gapvd1-202ENSMUST00000102800 8339 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Brf1Q8CFK2 Nphp4-201ENSMUST00000056567 4583 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.06
Brf1Q8CFK2 Srsf10-205ENSMUST00000126641 3754 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Brf1Q8CFK2 Slc26a5-201ENSMUST00000030878 2962 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Brf1Q8CFK2 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Brf1Q8CFK2 Gm12132-201ENSMUST00000130945 1391 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Brf1Q8CFK2 Pigq-201ENSMUST00000026823 3173 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
Brf1Q8CFK2 Neurog3-201ENSMUST00000050103 1540 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Brf1Q8CFK2 Arfip1-201ENSMUST00000098990 2799 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Brf1Q8CFK2 Mrps35-201ENSMUST00000036111 4162 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Brf1Q8CFK2 5830462O15Rik-201ENSMUST00000214603 1655 ntBASIC15.39■□□□□ 0.05
Brf1Q8CFK2 Gm13814-201ENSMUST00000141341 3077 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Brf1Q8CFK2 Ermard-203ENSMUST00000097393 2535 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
Brf1Q8CFK2 Tex13c2-201ENSMUST00000197237 1834 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
Brf1Q8CFK2 Txn2-202ENSMUST00000100486 676 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Brf1Q8CFK2 Mrps17-205ENSMUST00000119985 859 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
Brf1Q8CFK2 Ict1os-201ENSMUST00000125653 1052 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Brf1Q8CFK2 Cox6c-203ENSMUST00000153512 738 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
Brf1Q8CFK2 4930516B21Rik-201ENSMUST00000181600 1195 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Brf1Q8CFK2 Gm3890-201ENSMUST00000182416 207 ntBASIC15.39■□□□□ 0.05
Brf1Q8CFK2 Gm5370-201ENSMUST00000187187 574 ntBASIC15.39■□□□□ 0.05
Retrieved 100 of 76,532 protein–RNA pairs in 33.3 ms