Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Nbdy-202ENSMUST00000149514 775 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
Usp40Q8BWR4 Vmo1-201ENSMUST00000021179 672 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
Usp40Q8BWR4 Rassf5-205ENSMUST00000212202 958 ntTSL 5 BASIC17.46■□□□□ 0.39
Usp40Q8BWR4 Mpzl2-205ENSMUST00000217097 1175 ntTSL 5 BASIC17.46■□□□□ 0.39
Usp40Q8BWR4 AC167229.2-201ENSMUST00000218902 675 ntTSL 5 BASIC17.46■□□□□ 0.39
Usp40Q8BWR4 Mcc-202ENSMUST00000164666 3606 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Usp40Q8BWR4 Nepn-201ENSMUST00000067085 1844 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Usp40Q8BWR4 Fem1a-201ENSMUST00000060253 6816 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
Usp40Q8BWR4 Igf2os-203ENSMUST00000141681 4778 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Usp40Q8BWR4 Lrrfip1-202ENSMUST00000068167 2849 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
Usp40Q8BWR4 1600014C10Rik-205ENSMUST00000178876 3283 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Usp40Q8BWR4 Plekhg6-201ENSMUST00000042647 3299 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Usp40Q8BWR4 Chfr-202ENSMUST00000112519 3159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Usp40Q8BWR4 Nmral1-203ENSMUST00000115851 1306 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
Usp40Q8BWR4 Gm44291-201ENSMUST00000203102 2865 ntBASIC17.46■□□□□ 0.38
Usp40Q8BWR4 Mfsd13b-205ENSMUST00000216241 1761 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
Usp40Q8BWR4 Tacc3-201ENSMUST00000074849 2669 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Usp40Q8BWR4 Olfr71-202ENSMUST00000107862 2587 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
Usp40Q8BWR4 Gm36745-201ENSMUST00000213455 1594 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Usp40Q8BWR4 Gm43289-201ENSMUST00000200537 1475 ntBASIC17.45■□□□□ 0.38
Usp40Q8BWR4 Lmx1b-201ENSMUST00000041730 4790 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Usp40Q8BWR4 Brd2-202ENSMUST00000095347 2617 ntTSL 5 BASIC17.45■□□□□ 0.38
Usp40Q8BWR4 Mcmbp-201ENSMUST00000057557 4237 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Usp40Q8BWR4 Anapc11-201ENSMUST00000026128 3229 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Usp40Q8BWR4 Hid1-201ENSMUST00000044152 3236 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Usp40Q8BWR4 Prr15l-203ENSMUST00000107633 930 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
Usp40Q8BWR4 Hsd17b10-202ENSMUST00000112617 992 ntTSL 5 BASIC17.45■□□□□ 0.38
Usp40Q8BWR4 Gm13296-201ENSMUST00000117854 997 ntBASIC17.45■□□□□ 0.38
Usp40Q8BWR4 B9d1os-201ENSMUST00000137010 674 ntBASIC17.45■□□□□ 0.38
Usp40Q8BWR4 Rmrp-201ENSMUST00000157463 271 ntBASIC17.45■□□□□ 0.38
Usp40Q8BWR4 Gm16339-201ENSMUST00000160954 929 ntTSL 5 BASIC17.45■□□□□ 0.38
Usp40Q8BWR4 Ccdc28a-203ENSMUST00000173243 590 ntTSL 5 BASIC17.45■□□□□ 0.38
Usp40Q8BWR4 Nat8f7-202ENSMUST00000179613 686 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
Usp40Q8BWR4 Ip6k2-204ENSMUST00000192307 1191 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Usp40Q8BWR4 AL732506.1-201ENSMUST00000226420 281 ntBASIC17.45■□□□□ 0.38
Usp40Q8BWR4 Hsd17b10-201ENSMUST00000026289 962 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Usp40Q8BWR4 4930562F07Rik-201ENSMUST00000028061 830 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Usp40Q8BWR4 Gm8385-201ENSMUST00000058999 643 ntBASIC17.45■□□□□ 0.38
Usp40Q8BWR4 Itgb1-201ENSMUST00000090006 3815 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Usp40Q8BWR4 Pfkl-201ENSMUST00000020522 3730 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Usp40Q8BWR4 A530013C23Rik-201ENSMUST00000130679 2555 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Usp40Q8BWR4 Tgfbr3-201ENSMUST00000031224 6087 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Usp40Q8BWR4 Lag3-201ENSMUST00000032217 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Usp40Q8BWR4 Gm14703-201ENSMUST00000145894 1820 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Usp40Q8BWR4 Carmil3-201ENSMUST00000076236 4602 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
Usp40Q8BWR4 Ablim2-209ENSMUST00000129347 1995 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
Usp40Q8BWR4 Ccdc25-201ENSMUST00000022614 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Usp40Q8BWR4 Ckm-203ENSMUST00000208710 2742 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Usp40Q8BWR4 Gak-201ENSMUST00000046603 4453 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Usp40Q8BWR4 Gm16168-201ENSMUST00000161091 1359 ntTSL 3 BASIC17.44■□□□□ 0.38
Usp40Q8BWR4 Smc6-208ENSMUST00000218866 3373 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Usp40Q8BWR4 Cd247-201ENSMUST00000005907 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Usp40Q8BWR4 Pitpnb-201ENSMUST00000086635 2761 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
Usp40Q8BWR4 Gm35082-202ENSMUST00000208164 525 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Usp40Q8BWR4 Gm3898-202ENSMUST00000216905 328 ntTSL 2 BASIC17.44■□□□□ 0.38
Usp40Q8BWR4 AC154305.4-201ENSMUST00000224520 614 ntBASIC17.44■□□□□ 0.38
Usp40Q8BWR4 Dpm2-203ENSMUST00000140592 1412 ntTSL 5 BASIC17.44■□□□□ 0.38
Usp40Q8BWR4 Zfp595-205ENSMUST00000171466 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Usp40Q8BWR4 Ppm1b-204ENSMUST00000112307 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Usp40Q8BWR4 Arid4b-203ENSMUST00000110534 5864 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp40Q8BWR4 Gm44851-201ENSMUST00000205735 2309 ntBASIC17.43■□□□□ 0.38
Usp40Q8BWR4 Sbk1-201ENSMUST00000056028 4109 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp40Q8BWR4 Sp4-203ENSMUST00000222314 2677 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp40Q8BWR4 Ncmap-202ENSMUST00000105857 958 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp40Q8BWR4 Limd2-203ENSMUST00000106875 936 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
Usp40Q8BWR4 Cyb5d1-202ENSMUST00000108660 1034 ntTSL 5 BASIC17.43■□□□□ 0.38
Usp40Q8BWR4 Gm5638-201ENSMUST00000118618 1258 ntBASIC17.43■□□□□ 0.38
Usp40Q8BWR4 Uxt-202ENSMUST00000123836 875 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp40Q8BWR4 Aif1-203ENSMUST00000172693 842 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp40Q8BWR4 Gm25732-201ENSMUST00000175168 60 ntBASIC17.43■□□□□ 0.38
Usp40Q8BWR4 Mir6927-201ENSMUST00000184494 71 ntBASIC17.43■□□□□ 0.38
Usp40Q8BWR4 Gm18304-201ENSMUST00000189162 546 ntBASIC17.43■□□□□ 0.38
Usp40Q8BWR4 Gm28192-201ENSMUST00000189381 778 ntTSL 5 BASIC17.43■□□□□ 0.38
Usp40Q8BWR4 Phgdh-ps1-201ENSMUST00000207540 754 ntBASIC17.43■□□□□ 0.38
Usp40Q8BWR4 4930479H17Rik-201ENSMUST00000208824 292 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Usp40Q8BWR4 Rpl29-201ENSMUST00000059802 710 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp40Q8BWR4 Gm17080-201ENSMUST00000087588 811 ntTSL 5 BASIC17.43■□□□□ 0.38
Usp40Q8BWR4 Vmn1r197-201ENSMUST00000091734 897 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
Usp40Q8BWR4 Mau2-202ENSMUST00000168013 5323 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
Usp40Q8BWR4 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp40Q8BWR4 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp40Q8BWR4 Gpsm2-201ENSMUST00000029482 3498 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp40Q8BWR4 Ankrd33b-204ENSMUST00000123325 7466 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp40Q8BWR4 Rab3d-201ENSMUST00000115351 3835 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp40Q8BWR4 Gucy2e-202ENSMUST00000108664 4415 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
Usp40Q8BWR4 Gm5421-201ENSMUST00000181698 2354 ntBASIC17.43■□□□□ 0.38
Usp40Q8BWR4 Ncaph-201ENSMUST00000110387 2695 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp40Q8BWR4 Col9a3-201ENSMUST00000103059 2846 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp40Q8BWR4 Mpp3-202ENSMUST00000100400 2997 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp40Q8BWR4 Gm45638-201ENSMUST00000211507 2878 ntBASIC17.42■□□□□ 0.38
Usp40Q8BWR4 Zfp618-202ENSMUST00000064814 2868 ntAPPRIS P2 TSL 5 BASIC17.42■□□□□ 0.38
Usp40Q8BWR4 Il2rg-201ENSMUST00000033664 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usp40Q8BWR4 Lexm-204ENSMUST00000189032 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usp40Q8BWR4 C530008M17Rik-203ENSMUST00000120818 1378 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Usp40Q8BWR4 Irx3os-203ENSMUST00000133528 1354 ntTSL 5 BASIC17.42■□□□□ 0.38
Usp40Q8BWR4 Opa1-201ENSMUST00000038867 3230 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Usp40Q8BWR4 Rph3al-204ENSMUST00000121287 2199 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Usp40Q8BWR4 Npc2-201ENSMUST00000021668 3299 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usp40Q8BWR4 Trp63-204ENSMUST00000115305 1729 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usp40Q8BWR4 Gcom1-201ENSMUST00000163998 1726 ntAPPRIS P5 TSL 5 BASIC17.42■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 34.2 ms