Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Mafk-201ENSMUST00000018287 2849 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-1P97436 Gm6992-201ENSMUST00000217973 1607 ntBASIC11.05□□□□□ -0.64
Nkx3-1P97436 Trim26-201ENSMUST00000053434 3198 ntAPPRIS P2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-1P97436 Gm3287-205ENSMUST00000228893 1332 ntBASIC11.05□□□□□ -0.64
Nkx3-1P97436 Steap2-201ENSMUST00000015797 3657 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-1P97436 Dnm1-201ENSMUST00000078352 3246 ntAPPRIS P2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-1P97436 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC11.05□□□□□ -0.64
Nkx3-1P97436 B430305J03Rik-201ENSMUST00000066298 3702 ntAPPRIS P1 BASIC11.05□□□□□ -0.64
Nkx3-1P97436 Sec23b-201ENSMUST00000028916 2779 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-1P97436 Nfib-203ENSMUST00000107245 9116 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-1P97436 Rph3a-203ENSMUST00000202326 2621 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-1P97436 Enpp5-203ENSMUST00000154166 2490 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-1P97436 Zfp467-205ENSMUST00000114560 3266 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-1P97436 Pgghg-201ENSMUST00000079403 2981 ntAPPRIS P2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-1P97436 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-1P97436 Gm21982-201ENSMUST00000146232 3821 ntTSL 2 BASIC11.04□□□□□ -0.64
Nkx3-1P97436 2310035C23Rik-201ENSMUST00000039173 4328 ntAPPRIS P3 TSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-1P97436 Itga6-202ENSMUST00000112101 4156 ntAPPRIS ALT1 TSL 5 BASIC11.04□□□□□ -0.64
Nkx3-1P97436 Cpt2-201ENSMUST00000030345 2372 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-1P97436 Gjb5-201ENSMUST00000046498 1721 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-1P97436 Gtf3c5-201ENSMUST00000028157 2739 ntAPPRIS P3 TSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-1P97436 Pik3cd-205ENSMUST00000118704 4894 ntAPPRIS ALT1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-1P97436 Cramp1l-201ENSMUST00000073337 7517 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-1P97436 Timp3-201ENSMUST00000020234 4722 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-1P97436 Tjap1-202ENSMUST00000164342 2559 ntAPPRIS P2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-1P97436 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-1P97436 Xpr1-203ENSMUST00000111775 4094 ntTSL 5 BASIC11.04□□□□□ -0.64
Nkx3-1P97436 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-1P97436 AC154262.2-201ENSMUST00000224310 2293 ntBASIC11.04□□□□□ -0.64
Nkx3-1P97436 Rfc2-201ENSMUST00000023867 4995 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-1P97436 Ticrr-201ENSMUST00000035977 7199 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-1P97436 Mettl1-201ENSMUST00000006915 1791 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-1P97436 Nup160-201ENSMUST00000057481 5684 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-1P97436 Rnf10-203ENSMUST00000112097 3476 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-1P97436 Hist1h4b-201ENSMUST00000102965 397 ntAPPRIS P1 BASIC11.04□□□□□ -0.64
Nkx3-1P97436 Park7-202ENSMUST00000105673 919 ntAPPRIS P1 TSL 5 BASIC11.04□□□□□ -0.64
Nkx3-1P97436 Tpm1-207ENSMUST00000113687 962 ntTSL 5 BASIC11.04□□□□□ -0.64
Nkx3-1P97436 Gm14130-201ENSMUST00000118417 987 ntBASIC11.04□□□□□ -0.64
Nkx3-1P97436 Tspan5-202ENSMUST00000119993 2107 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-1P97436 D630024D03Rik-201ENSMUST00000126265 720 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-1P97436 Platr29-201ENSMUST00000130022 830 ntTSL 5 BASIC11.04□□□□□ -0.64
Nkx3-1P97436 Cox6c-203ENSMUST00000153512 738 ntAPPRIS P1 TSL 2 BASIC11.04□□□□□ -0.64
Nkx3-1P97436 Tmem205-202ENSMUST00000178988 862 ntAPPRIS P1 TSL 2 BASIC11.04□□□□□ -0.64
Nkx3-1P97436 Gm27046-201ENSMUST00000182160 463 ntBASIC11.04□□□□□ -0.64
Nkx3-1P97436 Gm2260-201ENSMUST00000184965 657 ntBASIC11.04□□□□□ -0.64
Nkx3-1P97436 Gm43666-201ENSMUST00000197116 2989 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-1P97436 Gm43138-201ENSMUST00000199123 708 ntBASIC11.04□□□□□ -0.64
Nkx3-1P97436 Gm3786-201ENSMUST00000202659 378 ntBASIC11.04□□□□□ -0.64
Nkx3-1P97436 AC112680.3-201ENSMUST00000215297 488 ntTSL 3 BASIC11.04□□□□□ -0.64
Nkx3-1P97436 AC167013.1-201ENSMUST00000228592 202 ntBASIC11.04□□□□□ -0.64
Nkx3-1P97436 Riiad1-201ENSMUST00000029785 630 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-1P97436 Blvrb-201ENSMUST00000037399 1028 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-1P97436 Cryga-201ENSMUST00000061497 625 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-1P97436 Mks1-201ENSMUST00000038196 2499 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-1P97436 Pigh-201ENSMUST00000072154 2339 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-1P97436 Map7d1-201ENSMUST00000061143 3351 ntAPPRIS P3 TSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-1P97436 Ddx27-205ENSMUST00000150571 2151 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-1P97436 Zbtb17-201ENSMUST00000006377 2722 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-1P97436 Zfp575-201ENSMUST00000094705 2741 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-1P97436 Apol6-201ENSMUST00000127957 2034 ntAPPRIS P4 TSL 2 BASIC11.04□□□□□ -0.64
Nkx3-1P97436 Adh6a-202ENSMUST00000106247 1341 ntAPPRIS P2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-1P97436 Gm20646-201ENSMUST00000176807 1316 ntTSL 3 BASIC11.04□□□□□ -0.64
Nkx3-1P97436 Itgb4-202ENSMUST00000068981 5584 ntAPPRIS ALT2 TSL 5 BASIC11.04□□□□□ -0.64
Nkx3-1P97436 Syde2-203ENSMUST00000200546 4712 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-1P97436 Cd300lf-202ENSMUST00000106561 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-1P97436 Fn1-201ENSMUST00000055226 8315 ntAPPRIS P3 TSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-1P97436 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-1P97436 Dusp26-203ENSMUST00000161713 1524 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-1P97436 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-1P97436 E430024P14Rik-203ENSMUST00000160545 2833 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-1P97436 Tomt-202ENSMUST00000106970 1354 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Nkx3-1P97436 Bhmt2-201ENSMUST00000015941 2467 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Nkx3-1P97436 Axdnd1-204ENSMUST00000178036 3586 ntAPPRIS ALT2 TSL 5 BASIC11.03□□□□□ -0.64
Nkx3-1P97436 Ctbs-202ENSMUST00000061937 2892 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Nkx3-1P97436 Sirt4-201ENSMUST00000112066 1794 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Nkx3-1P97436 Abra-201ENSMUST00000054742 1762 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Nkx3-1P97436 Men1-202ENSMUST00000078137 2738 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Nkx3-1P97436 Prdm5-202ENSMUST00000031976 2155 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Nkx3-1P97436 Tbkbp1-201ENSMUST00000066078 3338 ntAPPRIS ALT2 TSL 5 BASIC11.03□□□□□ -0.64
Nkx3-1P97436 Hdgfl2-210ENSMUST00000225843 2238 ntAPPRIS ALT2 BASIC11.03□□□□□ -0.64
Nkx3-1P97436 Asap1-218ENSMUST00000177374 4582 ntAPPRIS P3 TSL 1 (best) BASIC11.03□□□□□ -0.64
Nkx3-1P97436 Skap1-202ENSMUST00000100519 1100 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Nkx3-1P97436 Rbm3-202ENSMUST00000115615 1183 ntAPPRIS ALT1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Nkx3-1P97436 Rbm3-203ENSMUST00000115616 1225 ntAPPRIS P3 TSL 1 (best) BASIC11.03□□□□□ -0.64
Nkx3-1P97436 Gm12058-201ENSMUST00000118614 437 ntBASIC11.03□□□□□ -0.64
Nkx3-1P97436 Tex22-201ENSMUST00000012355 1267 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Nkx3-1P97436 AA914427-201ENSMUST00000193194 1166 ntBASIC11.03□□□□□ -0.64
Nkx3-1P97436 Gm45925-201ENSMUST00000218882 744 ntBASIC11.03□□□□□ -0.64
Nkx3-1P97436 Tmem14a-202ENSMUST00000027065 1168 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Nkx3-1P97436 Psmb2-201ENSMUST00000030642 859 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Nkx3-1P97436 Crabp2-201ENSMUST00000005019 931 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Nkx3-1P97436 Nmral1-201ENSMUST00000074970 1155 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Nkx3-1P97436 Lrmda-201ENSMUST00000075639 908 ntAPPRIS P2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Nkx3-1P97436 Gm10131-201ENSMUST00000080152 736 ntAPPRIS P1 BASIC11.03□□□□□ -0.64
Nkx3-1P97436 Igsf23-204ENSMUST00000208974 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Nkx3-1P97436 Zfp429-201ENSMUST00000109732 2056 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Nkx3-1P97436 Nek3-202ENSMUST00000110730 2050 ntAPPRIS ALT2 TSL 5 BASIC11.03□□□□□ -0.64
Nkx3-1P97436 Hdgfl2-212ENSMUST00000226053 2270 ntAPPRIS P2 BASIC11.03□□□□□ -0.64
Nkx3-1P97436 Madd-212ENSMUST00000111375 5706 ntAPPRIS ALT2 TSL 5 BASIC11.03□□□□□ -0.64
Nkx3-1P97436 Caskin2-201ENSMUST00000041684 4929 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Retrieved 100 of 76,532 protein–RNA pairs in 64 ms