Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
RAPGEF3O95398 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC23.2■■□□□ 1.3
RAPGEF3O95398 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RAPGEF3O95398 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RAPGEF3O95398 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
RAPGEF3O95398 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC23.2■■□□□ 1.3
RAPGEF3O95398 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
RAPGEF3O95398 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC23.2■■□□□ 1.3
RAPGEF3O95398 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC23.2■■□□□ 1.3
RAPGEF3O95398 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RAPGEF3O95398 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.3
RAPGEF3O95398 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
RAPGEF3O95398 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RAPGEF3O95398 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC23.2■■□□□ 1.3
RAPGEF3O95398 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC23.2■■□□□ 1.3
RAPGEF3O95398 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC23.2■■□□□ 1.3
RAPGEF3O95398 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC23.2■■□□□ 1.3
RAPGEF3O95398 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC23.2■■□□□ 1.3
RAPGEF3O95398 AC090164.2-201ENST00000611487 516 ntBASIC23.2■■□□□ 1.3
RAPGEF3O95398 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RAPGEF3O95398 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RAPGEF3O95398 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RAPGEF3O95398 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
RAPGEF3O95398 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RAPGEF3O95398 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RAPGEF3O95398 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RAPGEF3O95398 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC23.2■■□□□ 1.3
RAPGEF3O95398 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC23.19■■□□□ 1.3
RAPGEF3O95398 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC23.19■■□□□ 1.3
RAPGEF3O95398 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC23.19■■□□□ 1.3
RAPGEF3O95398 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RAPGEF3O95398 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
RAPGEF3O95398 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RAPGEF3O95398 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC23.19■■□□□ 1.3
RAPGEF3O95398 LSM5-207ENST00000410044 687 ntTSL 3 BASIC23.19■■□□□ 1.3
RAPGEF3O95398 TUBB8P8-201ENST00000458717 1058 ntBASIC23.19■■□□□ 1.3
RAPGEF3O95398 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC23.19■■□□□ 1.3
RAPGEF3O95398 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC23.19■■□□□ 1.3
RAPGEF3O95398 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
RAPGEF3O95398 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC23.19■■□□□ 1.3
RAPGEF3O95398 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
RAPGEF3O95398 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
RAPGEF3O95398 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC23.19■■□□□ 1.3
RAPGEF3O95398 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RAPGEF3O95398 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC23.19■■□□□ 1.3
RAPGEF3O95398 AL158070.2-201ENST00000623713 1621 ntBASIC23.19■■□□□ 1.3
RAPGEF3O95398 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
RAPGEF3O95398 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
RAPGEF3O95398 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RAPGEF3O95398 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC23.18■■□□□ 1.3
RAPGEF3O95398 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
RAPGEF3O95398 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RAPGEF3O95398 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RAPGEF3O95398 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RAPGEF3O95398 NOC2LP2-201ENST00000407594 1944 ntBASIC23.18■■□□□ 1.3
RAPGEF3O95398 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC23.18■■□□□ 1.3
RAPGEF3O95398 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
RAPGEF3O95398 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
RAPGEF3O95398 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC23.18■■□□□ 1.3
RAPGEF3O95398 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RAPGEF3O95398 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
RAPGEF3O95398 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RAPGEF3O95398 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RAPGEF3O95398 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
RAPGEF3O95398 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
RAPGEF3O95398 PPOX-204ENST00000462866 473 ntTSL 5 BASIC23.18■■□□□ 1.3
RAPGEF3O95398 AC009041.1-201ENST00000565401 544 ntTSL 4 BASIC23.18■■□□□ 1.3
RAPGEF3O95398 MIR4313-201ENST00000580760 101 ntBASIC23.18■■□□□ 1.3
RAPGEF3O95398 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC23.18■■□□□ 1.3
RAPGEF3O95398 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC23.18■■□□□ 1.3
RAPGEF3O95398 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
RAPGEF3O95398 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
RAPGEF3O95398 AC127024.7-201ENST00000625101 200 ntBASIC23.18■■□□□ 1.3
RAPGEF3O95398 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC23.18■■□□□ 1.3
RAPGEF3O95398 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
RAPGEF3O95398 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
RAPGEF3O95398 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
RAPGEF3O95398 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
RAPGEF3O95398 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC23.18■■□□□ 1.3
RAPGEF3O95398 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
RAPGEF3O95398 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
RAPGEF3O95398 AC007787.1-201ENST00000588095 1583 ntBASIC23.18■■□□□ 1.3
RAPGEF3O95398 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC23.17■■□□□ 1.3
RAPGEF3O95398 AC018470.1-201ENST00000624790 3129 ntBASIC23.17■■□□□ 1.3
RAPGEF3O95398 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
RAPGEF3O95398 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC23.17■■□□□ 1.3
RAPGEF3O95398 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
RAPGEF3O95398 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
RAPGEF3O95398 HNRNPA1P41-201ENST00000397777 928 ntBASIC23.17■■□□□ 1.3
RAPGEF3O95398 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC23.17■■□□□ 1.3
RAPGEF3O95398 GHSR-202ENST00000427970 912 ntBASIC23.17■■□□□ 1.3
RAPGEF3O95398 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
RAPGEF3O95398 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC23.17■■□□□ 1.3
RAPGEF3O95398 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC23.17■■□□□ 1.3
RAPGEF3O95398 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC23.17■■□□□ 1.3
RAPGEF3O95398 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
RAPGEF3O95398 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC23.17■■□□□ 1.3
RAPGEF3O95398 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC23.17■■□□□ 1.3
RAPGEF3O95398 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC23.17■■□□□ 1.3
RAPGEF3O95398 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms