Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Gpsm2-201ENSMUST00000029482 3498 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col6a1Q04857 Acin1-216ENSMUST00000141453 2381 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Col6a1Q04857 Scg3-201ENSMUST00000034699 2384 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col6a1Q04857 CT025610.1-201ENSMUST00000224552 1786 ntBASIC14.15□□□□□ -0.14
Col6a1Q04857 Mogat2-201ENSMUST00000064231 1780 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col6a1Q04857 Nob1-201ENSMUST00000003946 1658 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col6a1Q04857 Gm44775-201ENSMUST00000207266 1456 ntBASIC14.15□□□□□ -0.14
Col6a1Q04857 Gm13996-201ENSMUST00000118456 430 ntBASIC14.15□□□□□ -0.14
Col6a1Q04857 Nmb-202ENSMUST00000119428 678 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
Col6a1Q04857 Gm454-201ENSMUST00000160126 751 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Col6a1Q04857 Hsbp1l1-201ENSMUST00000166219 1251 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col6a1Q04857 Apoe-208ENSMUST00000174191 472 ntTSL 2 BASIC14.15□□□□□ -0.14
Col6a1Q04857 Gm25700-201ENSMUST00000177693 110 ntBASIC14.15□□□□□ -0.14
Col6a1Q04857 Gm26740-201ENSMUST00000180456 358 ntTSL 3 BASIC14.15□□□□□ -0.14
Col6a1Q04857 Gm9211-201ENSMUST00000182882 975 ntBASIC14.15□□□□□ -0.14
Col6a1Q04857 Pmvk-203ENSMUST00000184515 1156 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Col6a1Q04857 Gm3096-201ENSMUST00000185770 364 ntBASIC14.15□□□□□ -0.14
Col6a1Q04857 Gm29179-208ENSMUST00000190450 1137 ntTSL 5 BASIC14.15□□□□□ -0.14
Col6a1Q04857 Gm45765-201ENSMUST00000212027 1035 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Col6a1Q04857 Gm45770-201ENSMUST00000212105 616 ntBASIC14.15□□□□□ -0.14
Col6a1Q04857 AC131330.1-201ENSMUST00000227814 1015 ntBASIC14.15□□□□□ -0.14
Col6a1Q04857 Pxt1-201ENSMUST00000051526 710 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col6a1Q04857 Ccdc70-202ENSMUST00000070649 961 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col6a1Q04857 Gm6994-201ENSMUST00000088880 1163 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Col6a1Q04857 Zbtb49-202ENSMUST00000114113 2645 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Col6a1Q04857 Ahcyl2-201ENSMUST00000064872 2019 ntAPPRIS ALT1 TSL 5 BASIC14.15□□□□□ -0.14
Col6a1Q04857 Spin1-201ENSMUST00000095797 4434 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col6a1Q04857 Dsp-202ENSMUST00000127906 7761 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Col6a1Q04857 Srebf2-201ENSMUST00000023100 4989 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col6a1Q04857 Ube2g1-201ENSMUST00000021148 3815 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col6a1Q04857 A530013C23Rik-201ENSMUST00000130679 2555 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Col6a1Q04857 Larp4b-202ENSMUST00000188211 5610 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col6a1Q04857 Dnajb4-204ENSMUST00000144950 2459 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col6a1Q04857 Dcaf11-204ENSMUST00000121622 2379 ntAPPRIS P2 TSL 5 BASIC14.15□□□□□ -0.14
Col6a1Q04857 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col6a1Q04857 Xrra1-202ENSMUST00000207855 1334 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.15
Col6a1Q04857 Scara5-201ENSMUST00000022610 3794 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col6a1Q04857 Gm2115-201ENSMUST00000180387 7055 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col6a1Q04857 Pkdrej-201ENSMUST00000064370 7058 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Col6a1Q04857 Rph3a-203ENSMUST00000202326 2621 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col6a1Q04857 Rpl21-201ENSMUST00000035983 1856 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col6a1Q04857 Aatk-201ENSMUST00000064307 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col6a1Q04857 Frmpd4-204ENSMUST00000112149 8456 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Col6a1Q04857 Rgs16-201ENSMUST00000027748 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col6a1Q04857 Clmp-201ENSMUST00000034522 4154 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col6a1Q04857 Gm29455-201ENSMUST00000186504 2659 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Col6a1Q04857 Brinp1-201ENSMUST00000030036 3212 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col6a1Q04857 Cd34-202ENSMUST00000110815 2554 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Col6a1Q04857 Entpd2-201ENSMUST00000028328 1935 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col6a1Q04857 Snord83b-201ENSMUST00000104546 94 ntBASIC14.14□□□□□ -0.15
Col6a1Q04857 Prdx1-202ENSMUST00000106470 877 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Col6a1Q04857 Cav2-202ENSMUST00000115459 974 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Col6a1Q04857 Tex22-201ENSMUST00000012355 1267 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col6a1Q04857 Gm11831-201ENSMUST00000141538 629 ntTSL 3 BASIC14.14□□□□□ -0.15
Col6a1Q04857 Gm8856-201ENSMUST00000185254 1144 ntBASIC14.14□□□□□ -0.15
Col6a1Q04857 AC123665.1-201ENSMUST00000228204 438 ntBASIC14.14□□□□□ -0.15
Col6a1Q04857 4930596D02Rik-201ENSMUST00000043266 1160 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col6a1Q04857 Dhx30-201ENSMUST00000062368 3806 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Col6a1Q04857 Adm2-201ENSMUST00000066991 1043 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col6a1Q04857 Zmym4-201ENSMUST00000106108 7102 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col6a1Q04857 Clcnka-202ENSMUST00000105790 2511 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col6a1Q04857 Lypla1-201ENSMUST00000027036 2507 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col6a1Q04857 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Col6a1Q04857 Exd2-201ENSMUST00000038185 3310 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col6a1Q04857 Malt1-202ENSMUST00000224056 4028 ntAPPRIS ALT2 BASIC14.14□□□□□ -0.15
Col6a1Q04857 Gm9924-202ENSMUST00000192760 2311 ntBASIC14.14□□□□□ -0.15
Col6a1Q04857 D430041D05Rik-201ENSMUST00000089726 10124 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Col6a1Q04857 Pde12-201ENSMUST00000052932 7725 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col6a1Q04857 Sdha-201ENSMUST00000022062 2900 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col6a1Q04857 Trim2-203ENSMUST00000107691 7428 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col6a1Q04857 Cenpo-201ENSMUST00000020981 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col6a1Q04857 Arhgap27os3-201ENSMUST00000124462 2729 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Col6a1Q04857 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a1Q04857 Slc25a15-201ENSMUST00000033871 3430 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a1Q04857 Bcl2-201ENSMUST00000112751 7191 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a1Q04857 Gm20488-201ENSMUST00000201641 2996 ntTSL 2 BASIC14.13□□□□□ -0.15
Col6a1Q04857 Pgghg-201ENSMUST00000079403 2981 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a1Q04857 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a1Q04857 Ctsa-203ENSMUST00000103093 2534 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a1Q04857 Sirt2-201ENSMUST00000072965 1843 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a1Q04857 Luc7l3-202ENSMUST00000107820 3478 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Col6a1Q04857 Slc6a4-202ENSMUST00000108402 2796 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Col6a1Q04857 Hnrnph1-203ENSMUST00000109142 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a1Q04857 Ccdc167-202ENSMUST00000128751 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a1Q04857 Mau2-202ENSMUST00000168013 5323 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Col6a1Q04857 Atxn7l1-202ENSMUST00000090597 2563 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a1Q04857 Nfat5-201ENSMUST00000075922 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a1Q04857 Nkx6-3-201ENSMUST00000071588 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a1Q04857 Nkain3-201ENSMUST00000102998 3098 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a1Q04857 Gm6370-201ENSMUST00000110611 1142 ntAPPRIS P2 TSL 5 BASIC14.13□□□□□ -0.15
Col6a1Q04857 Rap1a-ps2-201ENSMUST00000118467 559 ntBASIC14.13□□□□□ -0.15
Col6a1Q04857 Gm16481-201ENSMUST00000119074 1227 ntBASIC14.13□□□□□ -0.15
Col6a1Q04857 1810063I02Rik-201ENSMUST00000130205 274 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a1Q04857 Gm6309-201ENSMUST00000174320 1154 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Col6a1Q04857 Gm33104-201ENSMUST00000214178 1010 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a1Q04857 Gm18041-201ENSMUST00000218210 618 ntBASIC14.13□□□□□ -0.15
Col6a1Q04857 Gm31793-201ENSMUST00000218557 415 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a1Q04857 Hspb2-201ENSMUST00000042790 773 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a1Q04857 Slc6a19os-201ENSMUST00000022049 1532 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a1Q04857 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 43.9 ms