Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC14.92□□□□□ -0.02
COL5A1P20908 AC005077.2-201ENST00000449786 690 ntBASIC14.92□□□□□ -0.02
COL5A1P20908 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC14.92□□□□□ -0.02
COL5A1P20908 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC14.92□□□□□ -0.02
COL5A1P20908 AC073413.1-201ENST00000603927 732 ntBASIC14.92□□□□□ -0.02
COL5A1P20908 AC091812.3-201ENST00000621362 345 ntBASIC14.92□□□□□ -0.02
COL5A1P20908 AC244452.3-201ENST00000636814 210 ntBASIC14.92□□□□□ -0.02
COL5A1P20908 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC14.92□□□□□ -0.02
COL5A1P20908 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC14.92□□□□□ -0.02
COL5A1P20908 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL5A1P20908 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL5A1P20908 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
COL5A1P20908 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL5A1P20908 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC14.92□□□□□ -0.02
COL5A1P20908 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC14.92□□□□□ -0.02
COL5A1P20908 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL5A1P20908 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC14.92□□□□□ -0.02
COL5A1P20908 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL5A1P20908 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL5A1P20908 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL5A1P20908 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL5A1P20908 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL5A1P20908 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL5A1P20908 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL5A1P20908 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL5A1P20908 BANP-204ENST00000393208 2283 ntTSL 2 BASIC14.92□□□□□ -0.02
COL5A1P20908 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC14.92□□□□□ -0.02
COL5A1P20908 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC14.92□□□□□ -0.02
COL5A1P20908 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
COL5A1P20908 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL5A1P20908 SDCCAG3P2-201ENST00000326105 1023 ntBASIC14.92□□□□□ -0.02
COL5A1P20908 NUS1P3-201ENST00000423502 862 ntBASIC14.92□□□□□ -0.02
COL5A1P20908 AL354877.1-201ENST00000424412 413 ntBASIC14.92□□□□□ -0.02
COL5A1P20908 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
COL5A1P20908 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC14.92□□□□□ -0.02
COL5A1P20908 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC14.92□□□□□ -0.02
COL5A1P20908 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL5A1P20908 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC14.92□□□□□ -0.02
COL5A1P20908 AC104982.3-201ENST00000581995 514 ntBASIC14.92□□□□□ -0.02
COL5A1P20908 RN7SL713P-201ENST00000582127 302 ntBASIC14.92□□□□□ -0.02
COL5A1P20908 AC016629.1-201ENST00000596579 586 ntBASIC14.92□□□□□ -0.02
COL5A1P20908 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC14.92□□□□□ -0.02
COL5A1P20908 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL5A1P20908 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL5A1P20908 KRT8P14-201ENST00000414254 1442 ntBASIC14.91□□□□□ -0.02
COL5A1P20908 AC148477.4-201ENST00000613430 1793 ntBASIC14.91□□□□□ -0.02
COL5A1P20908 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
COL5A1P20908 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC14.91□□□□□ -0.02
COL5A1P20908 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL5A1P20908 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL5A1P20908 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC14.91□□□□□ -0.02
COL5A1P20908 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL5A1P20908 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
COL5A1P20908 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
COL5A1P20908 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL5A1P20908 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL5A1P20908 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL5A1P20908 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL5A1P20908 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL5A1P20908 AC011477.6-201ENST00000604980 1927 ntBASIC14.91□□□□□ -0.02
COL5A1P20908 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL5A1P20908 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
COL5A1P20908 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
COL5A1P20908 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL5A1P20908 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL5A1P20908 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL5A1P20908 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL5A1P20908 POM121L8P-201ENST00000417732 1281 ntBASIC14.91□□□□□ -0.02
COL5A1P20908 DEF8-202ENST00000418391 852 ntTSL 2 BASIC14.91□□□□□ -0.02
COL5A1P20908 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC14.91□□□□□ -0.02
COL5A1P20908 FAM8A4P-201ENST00000435433 1213 ntBASIC14.91□□□□□ -0.02
COL5A1P20908 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC14.91□□□□□ -0.02
COL5A1P20908 POM121L9P-203ENST00000441984 1285 ntBASIC14.91□□□□□ -0.02
COL5A1P20908 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL5A1P20908 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL5A1P20908 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC14.91□□□□□ -0.02
COL5A1P20908 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC14.91□□□□□ -0.02
COL5A1P20908 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC14.91□□□□□ -0.02
COL5A1P20908 HCG18-245ENST00000602550 559 ntTSL 4 BASIC14.91□□□□□ -0.02
COL5A1P20908 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
COL5A1P20908 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC14.91□□□□□ -0.02
COL5A1P20908 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC14.91□□□□□ -0.02
COL5A1P20908 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL5A1P20908 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL5A1P20908 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
COL5A1P20908 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC14.91□□□□□ -0.02
COL5A1P20908 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC14.91□□□□□ -0.02
COL5A1P20908 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC14.9□□□□□ -0.02
COL5A1P20908 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
COL5A1P20908 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC14.9□□□□□ -0.02
COL5A1P20908 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL5A1P20908 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL5A1P20908 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC14.9□□□□□ -0.02
COL5A1P20908 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC14.9□□□□□ -0.02
COL5A1P20908 PTPA-218ENST00000435132 618 ntTSL 2 BASIC14.9□□□□□ -0.02
COL5A1P20908 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
COL5A1P20908 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC14.9□□□□□ -0.02
COL5A1P20908 NCK2-206ENST00000522586 490 ntTSL 5 BASIC14.9□□□□□ -0.02
COL5A1P20908 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
COL5A1P20908 FOS-206ENST00000555347 1280 ntTSL 2 BASIC14.9□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms