Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC29.82■■■□□ 2.36
SHROOM4Q9ULL8 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC29.82■■■□□ 2.36
SHROOM4Q9ULL8 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC29.82■■■□□ 2.36
SHROOM4Q9ULL8 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC29.82■■■□□ 2.36
SHROOM4Q9ULL8 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC29.82■■■□□ 2.36
SHROOM4Q9ULL8 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC29.82■■■□□ 2.36
SHROOM4Q9ULL8 AP001282.1-201ENST00000531301 1499 ntBASIC29.82■■■□□ 2.36
SHROOM4Q9ULL8 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC29.82■■■□□ 2.36
SHROOM4Q9ULL8 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC29.82■■■□□ 2.36
SHROOM4Q9ULL8 AC134312.5-201ENST00000568031 1313 ntBASIC29.82■■■□□ 2.36
SHROOM4Q9ULL8 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC29.82■■■□□ 2.36
SHROOM4Q9ULL8 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC29.82■■■□□ 2.36
SHROOM4Q9ULL8 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
SHROOM4Q9ULL8 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC29.82■■■□□ 2.36
SHROOM4Q9ULL8 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC29.82■■■□□ 2.36
SHROOM4Q9ULL8 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC29.81■■■□□ 2.36
SHROOM4Q9ULL8 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC29.81■■■□□ 2.36
SHROOM4Q9ULL8 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC29.81■■■□□ 2.36
SHROOM4Q9ULL8 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC29.81■■■□□ 2.36
SHROOM4Q9ULL8 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC29.81■■■□□ 2.36
SHROOM4Q9ULL8 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC29.81■■■□□ 2.36
SHROOM4Q9ULL8 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC29.81■■■□□ 2.36
SHROOM4Q9ULL8 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC29.81■■■□□ 2.36
SHROOM4Q9ULL8 AC023310.1-201ENST00000554836 735 ntBASIC29.81■■■□□ 2.36
SHROOM4Q9ULL8 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC29.81■■■□□ 2.36
SHROOM4Q9ULL8 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC29.81■■■□□ 2.36
SHROOM4Q9ULL8 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC29.81■■■□□ 2.36
SHROOM4Q9ULL8 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
SHROOM4Q9ULL8 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC29.81■■■□□ 2.36
SHROOM4Q9ULL8 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC29.81■■■□□ 2.36
SHROOM4Q9ULL8 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC29.81■■■□□ 2.36
SHROOM4Q9ULL8 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC29.81■■■□□ 2.36
SHROOM4Q9ULL8 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
SHROOM4Q9ULL8 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
SHROOM4Q9ULL8 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC29.81■■■□□ 2.36
SHROOM4Q9ULL8 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC29.81■■■□□ 2.36
SHROOM4Q9ULL8 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC29.81■■■□□ 2.36
SHROOM4Q9ULL8 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC29.81■■■□□ 2.36
SHROOM4Q9ULL8 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
SHROOM4Q9ULL8 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
SHROOM4Q9ULL8 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
SHROOM4Q9ULL8 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
SHROOM4Q9ULL8 MIR33B-201ENST00000385104 96 ntBASIC29.8■■■□□ 2.36
SHROOM4Q9ULL8 IGF1-203ENST00000392904 761 ntTSL 5 BASIC29.8■■■□□ 2.36
SHROOM4Q9ULL8 EIF4HP1-201ENST00000453115 687 ntBASIC29.8■■■□□ 2.36
SHROOM4Q9ULL8 SLED1-202ENST00000512051 380 ntBASIC29.8■■■□□ 2.36
SHROOM4Q9ULL8 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
SHROOM4Q9ULL8 EEF1DP1-201ENST00000585891 896 ntBASIC29.8■■■□□ 2.36
SHROOM4Q9ULL8 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC29.8■■■□□ 2.36
SHROOM4Q9ULL8 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC29.8■■■□□ 2.36
SHROOM4Q9ULL8 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC29.8■■■□□ 2.36
SHROOM4Q9ULL8 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC29.8■■■□□ 2.36
SHROOM4Q9ULL8 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
SHROOM4Q9ULL8 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
SHROOM4Q9ULL8 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
SHROOM4Q9ULL8 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
SHROOM4Q9ULL8 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC29.8■■■□□ 2.36
SHROOM4Q9ULL8 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
SHROOM4Q9ULL8 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC29.8■■■□□ 2.36
SHROOM4Q9ULL8 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
SHROOM4Q9ULL8 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
SHROOM4Q9ULL8 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC29.8■■■□□ 2.36
SHROOM4Q9ULL8 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
SHROOM4Q9ULL8 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC29.8■■■□□ 2.36
SHROOM4Q9ULL8 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC29.8■■■□□ 2.36
SHROOM4Q9ULL8 PHKG1P2-201ENST00000457537 863 ntBASIC29.8■■■□□ 2.36
SHROOM4Q9ULL8 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC29.8■■■□□ 2.36
SHROOM4Q9ULL8 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
SHROOM4Q9ULL8 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC29.8■■■□□ 2.36
SHROOM4Q9ULL8 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC29.8■■■□□ 2.36
SHROOM4Q9ULL8 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
SHROOM4Q9ULL8 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
SHROOM4Q9ULL8 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
SHROOM4Q9ULL8 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
SHROOM4Q9ULL8 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC29.79■■■□□ 2.36
SHROOM4Q9ULL8 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC29.79■■■□□ 2.36
SHROOM4Q9ULL8 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
SHROOM4Q9ULL8 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC29.79■■■□□ 2.36
SHROOM4Q9ULL8 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC29.79■■■□□ 2.36
SHROOM4Q9ULL8 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
SHROOM4Q9ULL8 AC006001.1-201ENST00000325130 474 ntBASIC29.79■■■□□ 2.36
SHROOM4Q9ULL8 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC29.79■■■□□ 2.36
SHROOM4Q9ULL8 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC29.79■■■□□ 2.36
SHROOM4Q9ULL8 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC29.79■■■□□ 2.36
SHROOM4Q9ULL8 AC136604.1-201ENST00000418535 575 ntBASIC29.79■■■□□ 2.36
SHROOM4Q9ULL8 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC29.79■■■□□ 2.36
SHROOM4Q9ULL8 AHRR-211ENST00000515206 462 ntTSL 5 BASIC29.79■■■□□ 2.36
SHROOM4Q9ULL8 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC29.79■■■□□ 2.36
SHROOM4Q9ULL8 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC29.79■■■□□ 2.36
SHROOM4Q9ULL8 AC000095.1-201ENST00000603208 874 ntBASIC29.79■■■□□ 2.36
SHROOM4Q9ULL8 AL450472.2-201ENST00000603663 1156 ntBASIC29.79■■■□□ 2.36
SHROOM4Q9ULL8 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
SHROOM4Q9ULL8 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC29.79■■■□□ 2.36
SHROOM4Q9ULL8 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC29.79■■■□□ 2.36
SHROOM4Q9ULL8 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
SHROOM4Q9ULL8 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC29.78■■■□□ 2.36
SHROOM4Q9ULL8 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC29.78■■■□□ 2.36
SHROOM4Q9ULL8 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC29.78■■■□□ 2.36
SHROOM4Q9ULL8 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC29.78■■■□□ 2.36
SHROOM4Q9ULL8 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC29.78■■■□□ 2.36
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms