Protein–RNA interactions for Protein: Q7Z3Y7

KRT28, Keratin, type I cytoskeletal 28, humanhuman

Predictions only

Length 464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28Q7Z3Y7 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
KRT28Q7Z3Y7 FAM8A4P-201ENST00000435433 1213 ntBASIC21.13■□□□□ 0.97
KRT28Q7Z3Y7 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC21.13■□□□□ 0.97
KRT28Q7Z3Y7 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
KRT28Q7Z3Y7 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC21.13■□□□□ 0.97
KRT28Q7Z3Y7 RN7SL774P-201ENST00000577467 290 ntBASIC21.13■□□□□ 0.97
KRT28Q7Z3Y7 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC21.13■□□□□ 0.97
KRT28Q7Z3Y7 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC21.13■□□□□ 0.97
KRT28Q7Z3Y7 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC21.13■□□□□ 0.97
KRT28Q7Z3Y7 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
KRT28Q7Z3Y7 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
KRT28Q7Z3Y7 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC21.13■□□□□ 0.97
KRT28Q7Z3Y7 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
KRT28Q7Z3Y7 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
KRT28Q7Z3Y7 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC21.13■□□□□ 0.97
KRT28Q7Z3Y7 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
KRT28Q7Z3Y7 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
KRT28Q7Z3Y7 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
KRT28Q7Z3Y7 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC21.12■□□□□ 0.97
KRT28Q7Z3Y7 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
KRT28Q7Z3Y7 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
KRT28Q7Z3Y7 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
KRT28Q7Z3Y7 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
KRT28Q7Z3Y7 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
KRT28Q7Z3Y7 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
KRT28Q7Z3Y7 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
KRT28Q7Z3Y7 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC21.12■□□□□ 0.97
KRT28Q7Z3Y7 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC21.12■□□□□ 0.97
KRT28Q7Z3Y7 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
KRT28Q7Z3Y7 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC21.12■□□□□ 0.97
KRT28Q7Z3Y7 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
KRT28Q7Z3Y7 MPV17-204ENST00000399052 749 ntTSL 4 BASIC21.12■□□□□ 0.97
KRT28Q7Z3Y7 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC21.12■□□□□ 0.97
KRT28Q7Z3Y7 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC21.12■□□□□ 0.97
KRT28Q7Z3Y7 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC21.12■□□□□ 0.97
KRT28Q7Z3Y7 AC134698.3-201ENST00000523880 214 ntBASIC21.12■□□□□ 0.97
KRT28Q7Z3Y7 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
KRT28Q7Z3Y7 MIR4313-201ENST00000580760 101 ntBASIC21.12■□□□□ 0.97
KRT28Q7Z3Y7 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC21.12■□□□□ 0.97
KRT28Q7Z3Y7 PPY2P-201ENST00000582808 702 ntBASIC21.12■□□□□ 0.97
KRT28Q7Z3Y7 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
KRT28Q7Z3Y7 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC21.12■□□□□ 0.97
KRT28Q7Z3Y7 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
KRT28Q7Z3Y7 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
KRT28Q7Z3Y7 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
KRT28Q7Z3Y7 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC21.12■□□□□ 0.97
KRT28Q7Z3Y7 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC21.12■□□□□ 0.97
KRT28Q7Z3Y7 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
KRT28Q7Z3Y7 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
KRT28Q7Z3Y7 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
KRT28Q7Z3Y7 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
KRT28Q7Z3Y7 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC21.12■□□□□ 0.97
KRT28Q7Z3Y7 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
KRT28Q7Z3Y7 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
KRT28Q7Z3Y7 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC21.11■□□□□ 0.97
KRT28Q7Z3Y7 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
KRT28Q7Z3Y7 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
KRT28Q7Z3Y7 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
KRT28Q7Z3Y7 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
KRT28Q7Z3Y7 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
KRT28Q7Z3Y7 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC21.11■□□□□ 0.97
KRT28Q7Z3Y7 AC092978.1-202ENST00000637590 1327 ntBASIC21.11■□□□□ 0.97
KRT28Q7Z3Y7 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
KRT28Q7Z3Y7 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
KRT28Q7Z3Y7 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
KRT28Q7Z3Y7 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
KRT28Q7Z3Y7 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC21.11■□□□□ 0.97
KRT28Q7Z3Y7 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC21.11■□□□□ 0.97
KRT28Q7Z3Y7 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
KRT28Q7Z3Y7 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
KRT28Q7Z3Y7 ATP6V0CP2-201ENST00000469409 207 ntBASIC21.11■□□□□ 0.97
KRT28Q7Z3Y7 FGFR3P5-201ENST00000564496 886 ntBASIC21.11■□□□□ 0.97
KRT28Q7Z3Y7 AC005730.2-201ENST00000564549 1184 ntBASIC21.11■□□□□ 0.97
KRT28Q7Z3Y7 MIR3907-201ENST00000579424 151 ntBASIC21.11■□□□□ 0.97
KRT28Q7Z3Y7 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC21.11■□□□□ 0.97
KRT28Q7Z3Y7 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC21.11■□□□□ 0.97
KRT28Q7Z3Y7 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
KRT28Q7Z3Y7 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC21.11■□□□□ 0.97
KRT28Q7Z3Y7 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
KRT28Q7Z3Y7 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC21.11■□□□□ 0.97
KRT28Q7Z3Y7 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
KRT28Q7Z3Y7 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC21.11■□□□□ 0.97
KRT28Q7Z3Y7 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC21.11■□□□□ 0.97
KRT28Q7Z3Y7 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
KRT28Q7Z3Y7 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
KRT28Q7Z3Y7 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
KRT28Q7Z3Y7 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
KRT28Q7Z3Y7 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
KRT28Q7Z3Y7 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
KRT28Q7Z3Y7 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
KRT28Q7Z3Y7 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
KRT28Q7Z3Y7 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC21.1■□□□□ 0.97
KRT28Q7Z3Y7 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC21.1■□□□□ 0.97
KRT28Q7Z3Y7 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
KRT28Q7Z3Y7 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC21.1■□□□□ 0.97
KRT28Q7Z3Y7 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
KRT28Q7Z3Y7 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC21.1■□□□□ 0.97
KRT28Q7Z3Y7 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC21.1■□□□□ 0.97
KRT28Q7Z3Y7 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC21.1■□□□□ 0.97
KRT28Q7Z3Y7 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms