Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Aldh6a1-201ENSMUST00000085192 3399 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Nr1h4Q60641 AC129336.1-201ENSMUST00000220224 2277 ntBASIC12.26□□□□□ -0.45
Nr1h4Q60641 Syncrip-210ENSMUST00000174391 6257 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Nr1h4Q60641 Il12rb1-201ENSMUST00000000808 2873 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Nr1h4Q60641 Ccpg1-208ENSMUST00000150826 2939 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Nr1h4Q60641 Epha5-202ENSMUST00000113398 4830 ntTSL 5 BASIC12.26□□□□□ -0.45
Nr1h4Q60641 Gpr139-201ENSMUST00000084650 4843 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Nr1h4Q60641 Dbn1-201ENSMUST00000021950 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Nr1h4Q60641 Ccdc71-201ENSMUST00000061209 3092 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Nr1h4Q60641 Il13ra1-201ENSMUST00000033418 3712 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Nr1h4Q60641 Whamm-203ENSMUST00000209044 1879 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Nr1h4Q60641 Lztr1-201ENSMUST00000023444 3112 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Nr1h4Q60641 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC12.26□□□□□ -0.45
Nr1h4Q60641 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC12.26□□□□□ -0.45
Nr1h4Q60641 Ppp1r14d-202ENSMUST00000110820 790 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Nr1h4Q60641 Cbfa2t2-ps1-201ENSMUST00000117165 730 ntBASIC12.26□□□□□ -0.45
Nr1h4Q60641 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC12.26□□□□□ -0.45
Nr1h4Q60641 Gm27838-201ENSMUST00000184829 128 ntBASIC12.26□□□□□ -0.45
Nr1h4Q60641 Gm37935-201ENSMUST00000192012 982 ntBASIC12.26□□□□□ -0.45
Nr1h4Q60641 Gm38223-201ENSMUST00000194484 695 ntBASIC12.26□□□□□ -0.45
Nr1h4Q60641 Olfr1412-201ENSMUST00000062964 966 ntAPPRIS P1 BASIC12.26□□□□□ -0.45
Nr1h4Q60641 Neu4-201ENSMUST00000050890 4511 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
Nr1h4Q60641 Baiap3-202ENSMUST00000182056 4645 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Nr1h4Q60641 Arhgap27-204ENSMUST00000107024 3976 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
Nr1h4Q60641 AC154262.2-202ENSMUST00000225158 1331 ntBASIC12.26□□□□□ -0.45
Nr1h4Q60641 Pbx1-205ENSMUST00000176540 6876 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Nr1h4Q60641 Gprc5a-201ENSMUST00000050104 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Nr1h4Q60641 Adrb3-201ENSMUST00000081438 2795 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Nr1h4Q60641 Apol7a-201ENSMUST00000010745 1431 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Nr1h4Q60641 Ccnc-203ENSMUST00000108240 1406 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Nr1h4Q60641 Eci2-211ENSMUST00000171229 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Nr1h4Q60641 Pygm-201ENSMUST00000035269 2874 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Nr1h4Q60641 Kcnc2-204ENSMUST00000219301 2944 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Nr1h4Q60641 Tmem230-203ENSMUST00000110164 2957 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
Nr1h4Q60641 CT025678.1-201ENSMUST00000214795 2972 ntBASIC12.26□□□□□ -0.45
Nr1h4Q60641 Sh3bp5l-201ENSMUST00000073128 2977 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Nr1h4Q60641 Actn1-201ENSMUST00000021554 3734 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Nr1h4Q60641 Cacna1c-212ENSMUST00000187940 7507 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Nr1h4Q60641 Dnajc14-207ENSMUST00000219508 2298 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Nr1h4Q60641 Ccdc163-201ENSMUST00000030452 1524 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
Nr1h4Q60641 Pcdhgb5-201ENSMUST00000192535 4670 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Nr1h4Q60641 2410002F23Rik-206ENSMUST00000107950 3336 ntAPPRIS P2 TSL 2 BASIC12.26□□□□□ -0.45
Nr1h4Q60641 Ccdc30-202ENSMUST00000063642 2534 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Nr1h4Q60641 Ppara-202ENSMUST00000109422 3413 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Nr1h4Q60641 Tbc1d8-204ENSMUST00000193823 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Nr1h4Q60641 Nox3-201ENSMUST00000115800 1792 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Nr1h4Q60641 Wdr25-202ENSMUST00000167816 2657 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
Nr1h4Q60641 Fam60a-201ENSMUST00000054080 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Nr1h4Q60641 Vps36-201ENSMUST00000033866 3574 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Nr1h4Q60641 Rbm39-203ENSMUST00000109587 2810 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Nr1h4Q60641 Hoxc10-201ENSMUST00000001699 1909 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Nr1h4Q60641 Mlkl-202ENSMUST00000120432 1976 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Nr1h4Q60641 Klhl26-201ENSMUST00000066597 2991 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Nr1h4Q60641 Parp3-202ENSMUST00000112479 2030 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Nr1h4Q60641 Kif2a-202ENSMUST00000117423 2023 ntTSL 5 BASIC12.25□□□□□ -0.45
Nr1h4Q60641 Gm44094-201ENSMUST00000204703 2030 ntBASIC12.25□□□□□ -0.45
Nr1h4Q60641 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Nr1h4Q60641 Gm42840-201ENSMUST00000200303 2251 ntBASIC12.25□□□□□ -0.45
Nr1h4Q60641 Bod1l-204ENSMUST00000202908 10399 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Nr1h4Q60641 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Nr1h4Q60641 Ubqln1-202ENSMUST00000076454 3561 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Nr1h4Q60641 4933427G23Rik-201ENSMUST00000122963 2515 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Nr1h4Q60641 Myl4-203ENSMUST00000106957 943 ntAPPRIS P1 TSL 3 BASIC12.25□□□□□ -0.45
Nr1h4Q60641 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC12.25□□□□□ -0.45
Nr1h4Q60641 Ntan1-202ENSMUST00000115805 984 ntTSL 3 BASIC12.25□□□□□ -0.45
Nr1h4Q60641 D11Bhm181e-201ENSMUST00000122252 282 ntBASIC12.25□□□□□ -0.45
Nr1h4Q60641 Gm11515-201ENSMUST00000150818 701 ntTSL 2 BASIC12.25□□□□□ -0.45
Nr1h4Q60641 Gm12840-201ENSMUST00000156081 627 ntTSL 5 BASIC12.25□□□□□ -0.45
Nr1h4Q60641 AC156504.2-201ENSMUST00000213800 711 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Nr1h4Q60641 Med10-201ENSMUST00000022089 913 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Nr1h4Q60641 AC192088.1-201ENSMUST00000227561 301 ntBASIC12.25□□□□□ -0.45
Nr1h4Q60641 Lce1c-201ENSMUST00000047055 724 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Nr1h4Q60641 Ap1g2-201ENSMUST00000036041 2673 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Nr1h4Q60641 Anp32e-201ENSMUST00000015893 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Nr1h4Q60641 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Nr1h4Q60641 Serpinb12-202ENSMUST00000112724 1623 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Nr1h4Q60641 Prr18-202ENSMUST00000163887 3251 ntAPPRIS P1 TSL 3 BASIC12.25□□□□□ -0.45
Nr1h4Q60641 Abca7-201ENSMUST00000043866 6590 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Nr1h4Q60641 Gm26677-201ENSMUST00000180553 1672 ntTSL 5 BASIC12.25□□□□□ -0.45
Nr1h4Q60641 Frmpd1-202ENSMUST00000107804 5241 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
Nr1h4Q60641 Ppip5k1-202ENSMUST00000110625 5226 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Nr1h4Q60641 Cntnap1-201ENSMUST00000103109 5440 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Nr1h4Q60641 Cyp2b10-201ENSMUST00000005477 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Nr1h4Q60641 Gm14149-201ENSMUST00000123048 1853 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Nr1h4Q60641 Cldn15-201ENSMUST00000001790 1850 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Nr1h4Q60641 Cacna2d1-209ENSMUST00000199704 3861 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Nr1h4Q60641 Dnmt1-203ENSMUST00000178110 5870 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Nr1h4Q60641 Hjurp-206ENSMUST00000147393 2030 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Nr1h4Q60641 1110032A03Rik-201ENSMUST00000042468 2082 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Nr1h4Q60641 Nelfcd-202ENSMUST00000109075 2279 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Nr1h4Q60641 Mixl1-201ENSMUST00000027778 2294 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Nr1h4Q60641 Dtnb-201ENSMUST00000077930 2376 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Nr1h4Q60641 Pde3a-201ENSMUST00000043259 12302 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Nr1h4Q60641 Tgm1-201ENSMUST00000002389 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Nr1h4Q60641 Calcoco1-201ENSMUST00000023818 2822 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Nr1h4Q60641 Olfr648-202ENSMUST00000216612 2929 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
Nr1h4Q60641 Sh3bp2-202ENSMUST00000101316 3031 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Nr1h4Q60641 Arid5a-203ENSMUST00000115031 3002 ntTSL 2 BASIC12.24□□□□□ -0.45
Nr1h4Q60641 Rbfox2-202ENSMUST00000111581 3072 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Nr1h4Q60641 Arl14ep-201ENSMUST00000028536 3337 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 45.9 ms