Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Slc36a1-202ENSMUST00000108867 1611 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim56Q80VI1 Zbtb7b-201ENSMUST00000029677 3851 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim56Q80VI1 Marco-201ENSMUST00000027639 1925 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim56Q80VI1 Mcf2l-207ENSMUST00000110876 5253 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim56Q80VI1 Eif4g3-215ENSMUST00000203828 5289 ntTSL 5 BASIC15.22■□□□□ 0.03
Trim56Q80VI1 Tex9-206ENSMUST00000183574 1264 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim56Q80VI1 Crip2-202ENSMUST00000196015 772 ntTSL 3 BASIC15.22■□□□□ 0.03
Trim56Q80VI1 Gm44974-201ENSMUST00000206387 1279 ntBASIC15.22■□□□□ 0.03
Trim56Q80VI1 Gm45720-201ENSMUST00000211881 484 ntTSL 3 BASIC15.22■□□□□ 0.03
Trim56Q80VI1 Krtap4-7-201ENSMUST00000055121 984 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Trim56Q80VI1 Gm3052-202ENSMUST00000188254 2224 ntBASIC15.22■□□□□ 0.03
Trim56Q80VI1 Dcaf6-201ENSMUST00000027856 4110 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim56Q80VI1 Fetub-203ENSMUST00000167399 1421 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim56Q80VI1 Lypd1-202ENSMUST00000159417 6464 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim56Q80VI1 Nup98-201ENSMUST00000070165 4052 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Trim56Q80VI1 Nub1-201ENSMUST00000068825 3269 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim56Q80VI1 D630023F18Rik-201ENSMUST00000050047 2180 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim56Q80VI1 Pcnx3-201ENSMUST00000068169 5276 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Trim56Q80VI1 Pphln1-202ENSMUST00000068457 3816 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Trim56Q80VI1 Prkce-201ENSMUST00000097274 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim56Q80VI1 Stt3b-201ENSMUST00000035010 4221 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim56Q80VI1 Col7a1-201ENSMUST00000026740 9198 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim56Q80VI1 Pex19-201ENSMUST00000075895 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trim56Q80VI1 Dlx5-202ENSMUST00000142635 1324 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Trim56Q80VI1 Kcnn2-205ENSMUST00000183850 3546 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trim56Q80VI1 Pdp1-205ENSMUST00000108301 2635 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Trim56Q80VI1 Gm28323-201ENSMUST00000186817 2499 ntBASIC15.21■□□□□ 0.03
Trim56Q80VI1 Rph3al-204ENSMUST00000121287 2199 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Trim56Q80VI1 Gm7002-201ENSMUST00000221386 2165 ntBASIC15.21■□□□□ 0.03
Trim56Q80VI1 Zer1-202ENSMUST00000113677 4189 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trim56Q80VI1 Dapk1-201ENSMUST00000044083 5304 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trim56Q80VI1 Myh14-201ENSMUST00000048102 6457 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trim56Q80VI1 Etl4-208ENSMUST00000114614 5898 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trim56Q80VI1 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trim56Q80VI1 Tars2-201ENSMUST00000029752 2400 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trim56Q80VI1 Rps19-203ENSMUST00000108430 774 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trim56Q80VI1 Gm5940-201ENSMUST00000117582 1068 ntBASIC15.21■□□□□ 0.03
Trim56Q80VI1 Snhg20-201ENSMUST00000145438 459 ntTSL 3 BASIC15.21■□□□□ 0.03
Trim56Q80VI1 Gm16296-201ENSMUST00000159905 325 ntBASIC15.21■□□□□ 0.03
Trim56Q80VI1 Nudt17-202ENSMUST00000171249 1110 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trim56Q80VI1 Il15-202ENSMUST00000209363 1251 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trim56Q80VI1 Zkscan3-207ENSMUST00000223831 2101 ntBASIC15.21■□□□□ 0.03
Trim56Q80VI1 Gm7399-201ENSMUST00000032395 858 ntBASIC15.21■□□□□ 0.03
Trim56Q80VI1 Olfr1368-201ENSMUST00000055298 1064 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Trim56Q80VI1 Olfr12-201ENSMUST00000081274 1121 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Trim56Q80VI1 Atp2a3-204ENSMUST00000108486 4540 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Trim56Q80VI1 Mllt10-203ENSMUST00000114671 5063 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Trim56Q80VI1 Ssr1-203ENSMUST00000225246 1825 ntBASIC15.21■□□□□ 0.03
Trim56Q80VI1 Aptx-201ENSMUST00000030119 5250 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trim56Q80VI1 Necap1-201ENSMUST00000032477 2476 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Trim56Q80VI1 Gk5-202ENSMUST00000122383 4455 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.02
Trim56Q80VI1 Adtrp-202ENSMUST00000121404 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
Trim56Q80VI1 Gm6992-201ENSMUST00000217973 1607 ntBASIC15.21■□□□□ 0.02
Trim56Q80VI1 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
Trim56Q80VI1 Clmp-201ENSMUST00000034522 4154 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Trim56Q80VI1 Gpr18-201ENSMUST00000055475 1498 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trim56Q80VI1 Mief1-201ENSMUST00000023048 5081 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trim56Q80VI1 Gm36266-201ENSMUST00000196660 1749 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Trim56Q80VI1 Piezo1-209ENSMUST00000156333 8219 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trim56Q80VI1 Piezo1-201ENSMUST00000067252 8216 ntAPPRIS P2 TSL 5 BASIC15.2■□□□□ 0.02
Trim56Q80VI1 Slc6a8-201ENSMUST00000033752 3964 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Trim56Q80VI1 Vps36-201ENSMUST00000033866 3574 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trim56Q80VI1 Rbm14-201ENSMUST00000006625 3165 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trim56Q80VI1 Taf2-201ENSMUST00000041733 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trim56Q80VI1 Gm10451-201ENSMUST00000101281 1598 ntTSL 2 BASIC15.2■□□□□ 0.02
Trim56Q80VI1 Gpat3-201ENSMUST00000031255 2884 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trim56Q80VI1 Gtf2ird1-209ENSMUST00000171794 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trim56Q80VI1 Lamc2-201ENSMUST00000027753 5164 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Trim56Q80VI1 Exoc6b-203ENSMUST00000160197 5439 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trim56Q80VI1 Sstr5-202ENSMUST00000165183 2581 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trim56Q80VI1 Zfp819-203ENSMUST00000120935 2156 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Trim56Q80VI1 Cabp1-203ENSMUST00000112112 746 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trim56Q80VI1 Pin4-201ENSMUST00000113627 489 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trim56Q80VI1 Gm13316-201ENSMUST00000140537 691 ntBASIC15.2■□□□□ 0.02
Trim56Q80VI1 D230022J07Rik-201ENSMUST00000144735 1062 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Trim56Q80VI1 Gm24548-201ENSMUST00000158650 108 ntBASIC15.2■□□□□ 0.02
Trim56Q80VI1 Mir8109-201ENSMUST00000184375 117 ntBASIC15.2■□□□□ 0.02
Trim56Q80VI1 Gm4598-201ENSMUST00000206756 1080 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Trim56Q80VI1 Stambp-ps1-201ENSMUST00000209280 1208 ntBASIC15.2■□□□□ 0.02
Trim56Q80VI1 Aprt-203ENSMUST00000211823 590 ntTSL 3 BASIC15.2■□□□□ 0.02
Trim56Q80VI1 Ormdl2-204ENSMUST00000219524 724 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
Trim56Q80VI1 AC144543.1-201ENSMUST00000221840 1064 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Trim56Q80VI1 Abra-201ENSMUST00000054742 1762 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trim56Q80VI1 Itga6-202ENSMUST00000112101 4156 ntAPPRIS ALT1 TSL 5 BASIC15.2■□□□□ 0.02
Trim56Q80VI1 Tnfrsf22-203ENSMUST00000146692 2298 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trim56Q80VI1 Prpf38b-201ENSMUST00000029480 3026 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trim56Q80VI1 Tbc1d5-205ENSMUST00000224528 4764 ntAPPRIS ALT2 BASIC15.2■□□□□ 0.02
Trim56Q80VI1 Fam155a-201ENSMUST00000110969 3388 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trim56Q80VI1 Gm3756-201ENSMUST00000169182 1355 ntBASIC15.2■□□□□ 0.02
Trim56Q80VI1 Gm28590-201ENSMUST00000185679 1609 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Trim56Q80VI1 Serpinb13-201ENSMUST00000027564 1607 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trim56Q80VI1 Prrxl1-201ENSMUST00000068938 1610 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Trim56Q80VI1 Taz-204ENSMUST00000124200 1742 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Trim56Q80VI1 Kcnk13-201ENSMUST00000049788 3078 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trim56Q80VI1 Pdlim5-206ENSMUST00000195975 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trim56Q80VI1 Rnf214-201ENSMUST00000058720 3964 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trim56Q80VI1 Mdm4-201ENSMUST00000067398 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trim56Q80VI1 Insr-201ENSMUST00000091291 9355 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trim56Q80VI1 Ahcyl2-205ENSMUST00000125911 2039 ntTSL 5 BASIC15.19■□□□□ 0.02
Trim56Q80VI1 Klhl26-205ENSMUST00000210250 2974 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 35.7 ms