Protein–RNA interactions for Protein: S4R1M3

H2afb2, Histone H2A, mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H2afb2S4R1M3 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
H2afb2S4R1M3 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
H2afb2S4R1M3 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC21.22■□□□□ 0.99
H2afb2S4R1M3 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
H2afb2S4R1M3 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
H2afb2S4R1M3 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC21.21■□□□□ 0.99
H2afb2S4R1M3 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC21.21■□□□□ 0.99
H2afb2S4R1M3 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC21.21■□□□□ 0.99
H2afb2S4R1M3 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC21.21■□□□□ 0.99
H2afb2S4R1M3 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
H2afb2S4R1M3 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC21.21■□□□□ 0.99
H2afb2S4R1M3 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
H2afb2S4R1M3 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
H2afb2S4R1M3 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.99
H2afb2S4R1M3 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
H2afb2S4R1M3 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
H2afb2S4R1M3 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
H2afb2S4R1M3 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC21.2■□□□□ 0.98
H2afb2S4R1M3 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
H2afb2S4R1M3 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
H2afb2S4R1M3 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC21.19■□□□□ 0.98
H2afb2S4R1M3 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
H2afb2S4R1M3 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
H2afb2S4R1M3 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
H2afb2S4R1M3 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
H2afb2S4R1M3 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC21.19■□□□□ 0.98
H2afb2S4R1M3 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
H2afb2S4R1M3 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
H2afb2S4R1M3 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
H2afb2S4R1M3 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
H2afb2S4R1M3 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
H2afb2S4R1M3 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC21.18■□□□□ 0.98
H2afb2S4R1M3 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
H2afb2S4R1M3 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC21.17■□□□□ 0.98
H2afb2S4R1M3 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC21.17■□□□□ 0.98
H2afb2S4R1M3 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
H2afb2S4R1M3 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
H2afb2S4R1M3 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC21.16■□□□□ 0.98
H2afb2S4R1M3 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
H2afb2S4R1M3 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
H2afb2S4R1M3 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
H2afb2S4R1M3 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
H2afb2S4R1M3 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC21.15■□□□□ 0.98
H2afb2S4R1M3 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
H2afb2S4R1M3 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC21.14■□□□□ 0.97
H2afb2S4R1M3 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
H2afb2S4R1M3 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
H2afb2S4R1M3 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
H2afb2S4R1M3 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
H2afb2S4R1M3 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
H2afb2S4R1M3 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
H2afb2S4R1M3 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
H2afb2S4R1M3 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC21.13■□□□□ 0.97
H2afb2S4R1M3 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
H2afb2S4R1M3 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
H2afb2S4R1M3 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
H2afb2S4R1M3 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
H2afb2S4R1M3 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
H2afb2S4R1M3 Nsd1-203ENSMUST00000224156 1149 ntBASIC21.12■□□□□ 0.97
H2afb2S4R1M3 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
H2afb2S4R1M3 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
H2afb2S4R1M3 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC21.12■□□□□ 0.97
H2afb2S4R1M3 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
H2afb2S4R1M3 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
H2afb2S4R1M3 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
H2afb2S4R1M3 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
H2afb2S4R1M3 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
H2afb2S4R1M3 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
H2afb2S4R1M3 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
H2afb2S4R1M3 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC21.11■□□□□ 0.97
H2afb2S4R1M3 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
H2afb2S4R1M3 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC21.1■□□□□ 0.97
H2afb2S4R1M3 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
H2afb2S4R1M3 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
H2afb2S4R1M3 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
H2afb2S4R1M3 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
H2afb2S4R1M3 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
H2afb2S4R1M3 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
H2afb2S4R1M3 Gm28536-201ENSMUST00000190971 1317 ntBASIC21.09■□□□□ 0.97
H2afb2S4R1M3 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC21.09■□□□□ 0.97
H2afb2S4R1M3 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC21.09■□□□□ 0.97
H2afb2S4R1M3 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC21.09■□□□□ 0.97
H2afb2S4R1M3 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
H2afb2S4R1M3 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
H2afb2S4R1M3 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
H2afb2S4R1M3 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
H2afb2S4R1M3 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC21.08■□□□□ 0.97
H2afb2S4R1M3 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC21.08■□□□□ 0.97
H2afb2S4R1M3 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
H2afb2S4R1M3 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
H2afb2S4R1M3 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
H2afb2S4R1M3 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
H2afb2S4R1M3 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
H2afb2S4R1M3 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
H2afb2S4R1M3 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
H2afb2S4R1M3 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
H2afb2S4R1M3 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
H2afb2S4R1M3 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
H2afb2S4R1M3 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
H2afb2S4R1M3 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 83.1 ms