Protein–RNA interactions for Protein: Q8K445

Clrn1, Clarin-1, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn1Q8K445 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC19.99■□□□□ 0.79
Clrn1Q8K445 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Clrn1Q8K445 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Clrn1Q8K445 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC19.98■□□□□ 0.79
Clrn1Q8K445 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Clrn1Q8K445 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
Clrn1Q8K445 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC19.98■□□□□ 0.79
Clrn1Q8K445 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC19.98■□□□□ 0.79
Clrn1Q8K445 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Clrn1Q8K445 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Clrn1Q8K445 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Clrn1Q8K445 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Clrn1Q8K445 Gm45444-201ENSMUST00000211394 898 ntBASIC19.97■□□□□ 0.79
Clrn1Q8K445 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC19.97■□□□□ 0.79
Clrn1Q8K445 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Clrn1Q8K445 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Clrn1Q8K445 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC19.96■□□□□ 0.79
Clrn1Q8K445 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Clrn1Q8K445 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC19.96■□□□□ 0.79
Clrn1Q8K445 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Clrn1Q8K445 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC19.96■□□□□ 0.79
Clrn1Q8K445 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Clrn1Q8K445 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Clrn1Q8K445 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC19.95■□□□□ 0.78
Clrn1Q8K445 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Clrn1Q8K445 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC19.95■□□□□ 0.78
Clrn1Q8K445 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Clrn1Q8K445 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Clrn1Q8K445 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Clrn1Q8K445 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
Clrn1Q8K445 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Clrn1Q8K445 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Clrn1Q8K445 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
Clrn1Q8K445 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
Clrn1Q8K445 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
Clrn1Q8K445 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Clrn1Q8K445 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Clrn1Q8K445 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
Clrn1Q8K445 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
Clrn1Q8K445 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Clrn1Q8K445 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Clrn1Q8K445 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
Clrn1Q8K445 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Clrn1Q8K445 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC19.92■□□□□ 0.78
Clrn1Q8K445 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Clrn1Q8K445 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Clrn1Q8K445 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Clrn1Q8K445 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
Clrn1Q8K445 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC19.92■□□□□ 0.78
Clrn1Q8K445 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Clrn1Q8K445 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Clrn1Q8K445 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Clrn1Q8K445 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Clrn1Q8K445 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
Clrn1Q8K445 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Clrn1Q8K445 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Clrn1Q8K445 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC19.91■□□□□ 0.78
Clrn1Q8K445 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Clrn1Q8K445 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC19.91■□□□□ 0.78
Clrn1Q8K445 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC19.91■□□□□ 0.78
Clrn1Q8K445 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Clrn1Q8K445 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Clrn1Q8K445 Gm28536-201ENSMUST00000190971 1317 ntBASIC19.91■□□□□ 0.78
Clrn1Q8K445 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Clrn1Q8K445 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Clrn1Q8K445 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
Clrn1Q8K445 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Clrn1Q8K445 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Clrn1Q8K445 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Clrn1Q8K445 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Clrn1Q8K445 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Clrn1Q8K445 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
Clrn1Q8K445 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
Clrn1Q8K445 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Clrn1Q8K445 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Clrn1Q8K445 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
Clrn1Q8K445 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Clrn1Q8K445 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
Clrn1Q8K445 Gm13238-201ENSMUST00000117655 780 ntBASIC19.89■□□□□ 0.77
Clrn1Q8K445 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Clrn1Q8K445 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC19.89■□□□□ 0.77
Clrn1Q8K445 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Clrn1Q8K445 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Clrn1Q8K445 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Clrn1Q8K445 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Clrn1Q8K445 Gm43566-201ENSMUST00000196851 808 ntBASIC19.88■□□□□ 0.77
Clrn1Q8K445 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Clrn1Q8K445 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Clrn1Q8K445 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Clrn1Q8K445 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
Clrn1Q8K445 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Clrn1Q8K445 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Clrn1Q8K445 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Clrn1Q8K445 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Clrn1Q8K445 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Clrn1Q8K445 Gm11847-201ENSMUST00000125165 1119 ntBASIC19.87■□□□□ 0.77
Clrn1Q8K445 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC19.87■□□□□ 0.77
Clrn1Q8K445 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Clrn1Q8K445 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Clrn1Q8K445 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC19.87■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 15.8 ms