Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
Vps53Q8CCB4 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC31.92■■■□□ 2.7
Vps53Q8CCB4 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC31.9■■■□□ 2.7
Vps53Q8CCB4 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC31.88■■■□□ 2.69
Vps53Q8CCB4 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
Vps53Q8CCB4 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
Vps53Q8CCB4 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC31.85■■■□□ 2.69
Vps53Q8CCB4 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
Vps53Q8CCB4 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC31.79■■■□□ 2.68
Vps53Q8CCB4 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
Vps53Q8CCB4 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
Vps53Q8CCB4 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
Vps53Q8CCB4 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
Vps53Q8CCB4 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
Vps53Q8CCB4 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC31.7■■■□□ 2.67
Vps53Q8CCB4 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC31.69■■■□□ 2.66
Vps53Q8CCB4 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
Vps53Q8CCB4 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC31.67■■■□□ 2.66
Vps53Q8CCB4 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
Vps53Q8CCB4 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC31.58■■■□□ 2.65
Vps53Q8CCB4 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
Vps53Q8CCB4 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC31.51■■■□□ 2.63
Vps53Q8CCB4 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
Vps53Q8CCB4 Gm17082-201ENSMUST00000166043 1091 ntBASIC31.47■■■□□ 2.63
Vps53Q8CCB4 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
Vps53Q8CCB4 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC31.44■■■□□ 2.62
Vps53Q8CCB4 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
Vps53Q8CCB4 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC31.41■■■□□ 2.62
Vps53Q8CCB4 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC31.37■■■□□ 2.61
Vps53Q8CCB4 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC31.37■■■□□ 2.61
Vps53Q8CCB4 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
Vps53Q8CCB4 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC31.36■■■□□ 2.61
Vps53Q8CCB4 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
Vps53Q8CCB4 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC31.31■■■□□ 2.6
Vps53Q8CCB4 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
Vps53Q8CCB4 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC31.28■■■□□ 2.6
Vps53Q8CCB4 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC31.27■■■□□ 2.6
Vps53Q8CCB4 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
Vps53Q8CCB4 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC31.25■■■□□ 2.59
Vps53Q8CCB4 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
Vps53Q8CCB4 Gm27322-201ENSMUST00000184007 104 ntBASIC31.23■■■□□ 2.59
Vps53Q8CCB4 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
Vps53Q8CCB4 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
Vps53Q8CCB4 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
Vps53Q8CCB4 Gm24804-201ENSMUST00000174982 85 ntBASIC31.17■■■□□ 2.58
Vps53Q8CCB4 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
Vps53Q8CCB4 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC31.09■■■□□ 2.57
Vps53Q8CCB4 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC31.09■■■□□ 2.57
Vps53Q8CCB4 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
Vps53Q8CCB4 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
Vps53Q8CCB4 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC30.94■■■□□ 2.54
Vps53Q8CCB4 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
Vps53Q8CCB4 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
Vps53Q8CCB4 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
Vps53Q8CCB4 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC30.88■■■□□ 2.53
Vps53Q8CCB4 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
Vps53Q8CCB4 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC30.82■■■□□ 2.52
Vps53Q8CCB4 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC30.81■■■□□ 2.52
Vps53Q8CCB4 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
Vps53Q8CCB4 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
Vps53Q8CCB4 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
Vps53Q8CCB4 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
Vps53Q8CCB4 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC30.7■■■□□ 2.51
Vps53Q8CCB4 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC30.7■■■□□ 2.5
Vps53Q8CCB4 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC30.7■■■□□ 2.5
Vps53Q8CCB4 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC30.69■■■□□ 2.5
Vps53Q8CCB4 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
Vps53Q8CCB4 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC30.67■■■□□ 2.5
Vps53Q8CCB4 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
Vps53Q8CCB4 Zfp131-207ENSMUST00000224946 1783 ntBASIC30.62■■■□□ 2.49
Vps53Q8CCB4 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
Vps53Q8CCB4 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
Vps53Q8CCB4 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC30.6■■■□□ 2.49
Vps53Q8CCB4 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC30.59■■■□□ 2.49
Vps53Q8CCB4 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
Vps53Q8CCB4 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC30.58■■■□□ 2.49
Vps53Q8CCB4 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
Vps53Q8CCB4 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
Vps53Q8CCB4 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC30.53■■■□□ 2.48
Vps53Q8CCB4 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
Vps53Q8CCB4 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
Vps53Q8CCB4 Zfp131-205ENSMUST00000223812 663 ntBASIC30.5■■■□□ 2.47
Vps53Q8CCB4 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
Vps53Q8CCB4 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC30.48■■■□□ 2.47
Vps53Q8CCB4 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
Vps53Q8CCB4 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
Vps53Q8CCB4 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
Vps53Q8CCB4 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC30.42■■■□□ 2.46
Vps53Q8CCB4 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC30.4■■■□□ 2.46
Vps53Q8CCB4 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC30.39■■■□□ 2.46
Vps53Q8CCB4 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
Vps53Q8CCB4 AC166822.3-201ENSMUST00000227394 661 ntBASIC30.38■■■□□ 2.45
Vps53Q8CCB4 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
Vps53Q8CCB4 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
Vps53Q8CCB4 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
Vps53Q8CCB4 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC30.34■■■□□ 2.45
Vps53Q8CCB4 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
Vps53Q8CCB4 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
Vps53Q8CCB4 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC30.25■■■□□ 2.43
Vps53Q8CCB4 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
Retrieved 100 of 76,532 protein–RNA pairs in 29.7 ms