Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC30.98■■■□□ 2.55
Smarca1Q6PGB8 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC30.93■■■□□ 2.54
Smarca1Q6PGB8 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
Smarca1Q6PGB8 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC30.88■■■□□ 2.53
Smarca1Q6PGB8 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC30.84■■■□□ 2.53
Smarca1Q6PGB8 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
Smarca1Q6PGB8 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
Smarca1Q6PGB8 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
Smarca1Q6PGB8 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC30.73■■■□□ 2.51
Smarca1Q6PGB8 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
Smarca1Q6PGB8 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC30.71■■■□□ 2.51
Smarca1Q6PGB8 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
Smarca1Q6PGB8 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC30.7■■■□□ 2.5
Smarca1Q6PGB8 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
Smarca1Q6PGB8 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
Smarca1Q6PGB8 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC30.6■■■□□ 2.49
Smarca1Q6PGB8 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
Smarca1Q6PGB8 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
Smarca1Q6PGB8 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC30.6■■■□□ 2.49
Smarca1Q6PGB8 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
Smarca1Q6PGB8 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
Smarca1Q6PGB8 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC30.57■■■□□ 2.48
Smarca1Q6PGB8 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
Smarca1Q6PGB8 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC30.56■■■□□ 2.48
Smarca1Q6PGB8 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
Smarca1Q6PGB8 Gm26115-201ENSMUST00000175605 87 ntBASIC30.54■■■□□ 2.48
Smarca1Q6PGB8 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC30.52■■■□□ 2.48
Smarca1Q6PGB8 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
Smarca1Q6PGB8 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC30.51■■■□□ 2.47
Smarca1Q6PGB8 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC30.49■■■□□ 2.47
Smarca1Q6PGB8 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
Smarca1Q6PGB8 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC30.44■■■□□ 2.46
Smarca1Q6PGB8 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
Smarca1Q6PGB8 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC30.42■■■□□ 2.46
Smarca1Q6PGB8 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC30.4■■■□□ 2.46
Smarca1Q6PGB8 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC30.38■■■□□ 2.45
Smarca1Q6PGB8 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
Smarca1Q6PGB8 Gm8109-201ENSMUST00000194076 746 ntBASIC30.33■■■□□ 2.45
Smarca1Q6PGB8 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
Smarca1Q6PGB8 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
Smarca1Q6PGB8 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC30.24■■■□□ 2.43
Smarca1Q6PGB8 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC30.22■■■□□ 2.43
Smarca1Q6PGB8 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
Smarca1Q6PGB8 Gm17082-201ENSMUST00000166043 1091 ntBASIC30.14■■■□□ 2.42
Smarca1Q6PGB8 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
Smarca1Q6PGB8 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
Smarca1Q6PGB8 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
Smarca1Q6PGB8 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
Smarca1Q6PGB8 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
Smarca1Q6PGB8 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
Smarca1Q6PGB8 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC30.02■■■□□ 2.4
Smarca1Q6PGB8 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC30.02■■■□□ 2.4
Smarca1Q6PGB8 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC30■■■□□ 2.39
Smarca1Q6PGB8 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
Smarca1Q6PGB8 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
Smarca1Q6PGB8 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
Smarca1Q6PGB8 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC29.96■■■□□ 2.39
Smarca1Q6PGB8 Gm27322-201ENSMUST00000184007 104 ntBASIC29.95■■■□□ 2.39
Smarca1Q6PGB8 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC29.93■■■□□ 2.38
Smarca1Q6PGB8 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
Smarca1Q6PGB8 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
Smarca1Q6PGB8 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
Smarca1Q6PGB8 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC29.89■■■□□ 2.38
Smarca1Q6PGB8 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
Smarca1Q6PGB8 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC29.8■■■□□ 2.36
Smarca1Q6PGB8 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC29.78■■■□□ 2.36
Smarca1Q6PGB8 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC29.75■■■□□ 2.35
Smarca1Q6PGB8 Zfp131-207ENSMUST00000224946 1783 ntBASIC29.75■■■□□ 2.35
Smarca1Q6PGB8 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC29.74■■■□□ 2.35
Smarca1Q6PGB8 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
Smarca1Q6PGB8 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC29.71■■■□□ 2.35
Smarca1Q6PGB8 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC29.68■■■□□ 2.34
Smarca1Q6PGB8 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC29.67■■■□□ 2.34
Smarca1Q6PGB8 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
Smarca1Q6PGB8 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
Smarca1Q6PGB8 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC29.65■■■□□ 2.34
Smarca1Q6PGB8 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC29.63■■■□□ 2.33
Smarca1Q6PGB8 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
Smarca1Q6PGB8 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
Smarca1Q6PGB8 AL845457.1-201ENSMUST00000197244 68 ntBASIC29.55■■■□□ 2.32
Smarca1Q6PGB8 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
Smarca1Q6PGB8 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC29.49■■■□□ 2.31
Smarca1Q6PGB8 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC29.48■■■□□ 2.31
Smarca1Q6PGB8 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
Smarca1Q6PGB8 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
Smarca1Q6PGB8 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC29.48■■■□□ 2.31
Smarca1Q6PGB8 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC29.47■■■□□ 2.31
Smarca1Q6PGB8 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
Smarca1Q6PGB8 AC166822.3-201ENSMUST00000227394 661 ntBASIC29.46■■■□□ 2.31
Smarca1Q6PGB8 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
Smarca1Q6PGB8 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC29.45■■■□□ 2.31
Smarca1Q6PGB8 Gm24804-201ENSMUST00000174982 85 ntBASIC29.44■■■□□ 2.3
Smarca1Q6PGB8 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC29.42■■■□□ 2.3
Smarca1Q6PGB8 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
Smarca1Q6PGB8 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC29.41■■■□□ 2.3
Smarca1Q6PGB8 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC29.4■■■□□ 2.3
Smarca1Q6PGB8 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
Smarca1Q6PGB8 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC29.36■■■□□ 2.29
Smarca1Q6PGB8 Gm2415-204ENSMUST00000190235 2004 ntBASIC29.36■■■□□ 2.29
Smarca1Q6PGB8 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
Retrieved 100 of 76,532 protein–RNA pairs in 30 ms