Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Rab21-202ENSMUST00000218831 843 ntBASIC27.69■■■□□ 2.02
Sh3rf1Q69ZI1 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
Sh3rf1Q69ZI1 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
Sh3rf1Q69ZI1 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC27.65■■■□□ 2.02
Sh3rf1Q69ZI1 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC27.63■■■□□ 2.01
Sh3rf1Q69ZI1 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC27.61■■■□□ 2.01
Sh3rf1Q69ZI1 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC27.59■■■□□ 2.01
Sh3rf1Q69ZI1 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
Sh3rf1Q69ZI1 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
Sh3rf1Q69ZI1 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC27.54■■■□□ 2
Sh3rf1Q69ZI1 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC27.54■■■□□ 2
Sh3rf1Q69ZI1 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■■□□ 2
Sh3rf1Q69ZI1 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC27.51■■□□□ 1.99
Sh3rf1Q69ZI1 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC27.48■■□□□ 1.99
Sh3rf1Q69ZI1 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC27.47■■□□□ 1.99
Sh3rf1Q69ZI1 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC27.46■■□□□ 1.99
Sh3rf1Q69ZI1 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC27.44■■□□□ 1.98
Sh3rf1Q69ZI1 Gm26115-201ENSMUST00000175605 87 ntBASIC27.39■■□□□ 1.98
Sh3rf1Q69ZI1 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC27.37■■□□□ 1.97
Sh3rf1Q69ZI1 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
Sh3rf1Q69ZI1 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
Sh3rf1Q69ZI1 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
Sh3rf1Q69ZI1 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
Sh3rf1Q69ZI1 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
Sh3rf1Q69ZI1 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC27.33■■□□□ 1.97
Sh3rf1Q69ZI1 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
Sh3rf1Q69ZI1 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
Sh3rf1Q69ZI1 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC27.31■■□□□ 1.96
Sh3rf1Q69ZI1 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
Sh3rf1Q69ZI1 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC27.28■■□□□ 1.96
Sh3rf1Q69ZI1 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
Sh3rf1Q69ZI1 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
Sh3rf1Q69ZI1 Gm8109-201ENSMUST00000194076 746 ntBASIC27.25■■□□□ 1.95
Sh3rf1Q69ZI1 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC27.22■■□□□ 1.95
Sh3rf1Q69ZI1 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
Sh3rf1Q69ZI1 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC27.19■■□□□ 1.94
Sh3rf1Q69ZI1 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
Sh3rf1Q69ZI1 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
Sh3rf1Q69ZI1 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC27.16■■□□□ 1.94
Sh3rf1Q69ZI1 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC27.16■■□□□ 1.94
Sh3rf1Q69ZI1 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
Sh3rf1Q69ZI1 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
Sh3rf1Q69ZI1 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC27.12■■□□□ 1.93
Sh3rf1Q69ZI1 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC27.09■■□□□ 1.93
Sh3rf1Q69ZI1 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC27.08■■□□□ 1.93
Sh3rf1Q69ZI1 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC27.05■■□□□ 1.92
Sh3rf1Q69ZI1 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC27.04■■□□□ 1.92
Sh3rf1Q69ZI1 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC27.02■■□□□ 1.92
Sh3rf1Q69ZI1 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
Sh3rf1Q69ZI1 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC26.97■■□□□ 1.91
Sh3rf1Q69ZI1 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC26.96■■□□□ 1.91
Sh3rf1Q69ZI1 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
Sh3rf1Q69ZI1 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC26.88■■□□□ 1.89
Sh3rf1Q69ZI1 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
Sh3rf1Q69ZI1 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
Sh3rf1Q69ZI1 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
Sh3rf1Q69ZI1 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
Sh3rf1Q69ZI1 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
Sh3rf1Q69ZI1 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC26.81■■□□□ 1.88
Sh3rf1Q69ZI1 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
Sh3rf1Q69ZI1 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC26.78■■□□□ 1.88
Sh3rf1Q69ZI1 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC26.75■■□□□ 1.87
Sh3rf1Q69ZI1 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC26.74■■□□□ 1.87
Sh3rf1Q69ZI1 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC26.72■■□□□ 1.87
Sh3rf1Q69ZI1 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
Sh3rf1Q69ZI1 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC26.72■■□□□ 1.87
Sh3rf1Q69ZI1 Gm17082-201ENSMUST00000166043 1091 ntBASIC26.71■■□□□ 1.87
Sh3rf1Q69ZI1 AC153504.1-201ENSMUST00000218379 2290 ntBASIC26.67■■□□□ 1.86
Sh3rf1Q69ZI1 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
Sh3rf1Q69ZI1 Gm2415-204ENSMUST00000190235 2004 ntBASIC26.61■■□□□ 1.85
Sh3rf1Q69ZI1 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
Sh3rf1Q69ZI1 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC26.55■■□□□ 1.84
Sh3rf1Q69ZI1 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC26.54■■□□□ 1.84
Sh3rf1Q69ZI1 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
Sh3rf1Q69ZI1 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
Sh3rf1Q69ZI1 Gm27322-201ENSMUST00000184007 104 ntBASIC26.51■■□□□ 1.83
Sh3rf1Q69ZI1 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Sh3rf1Q69ZI1 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Sh3rf1Q69ZI1 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
Sh3rf1Q69ZI1 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
Sh3rf1Q69ZI1 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
Sh3rf1Q69ZI1 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC26.45■■□□□ 1.83
Sh3rf1Q69ZI1 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC26.45■■□□□ 1.82
Sh3rf1Q69ZI1 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
Sh3rf1Q69ZI1 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
Sh3rf1Q69ZI1 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC26.42■■□□□ 1.82
Sh3rf1Q69ZI1 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC26.41■■□□□ 1.82
Sh3rf1Q69ZI1 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
Sh3rf1Q69ZI1 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC26.4■■□□□ 1.82
Sh3rf1Q69ZI1 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
Sh3rf1Q69ZI1 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
Sh3rf1Q69ZI1 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
Sh3rf1Q69ZI1 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
Sh3rf1Q69ZI1 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC26.38■■□□□ 1.81
Sh3rf1Q69ZI1 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
Sh3rf1Q69ZI1 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
Sh3rf1Q69ZI1 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
Sh3rf1Q69ZI1 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
Sh3rf1Q69ZI1 Zfp131-207ENSMUST00000224946 1783 ntBASIC26.35■■□□□ 1.81
Sh3rf1Q69ZI1 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
Retrieved 100 of 76,532 protein–RNA pairs in 13.5 ms