Protein–RNA interactions for Protein: D3YZU1

Shank1, SH3 and multiple ankyrin repeat domains protein 1, mousemouse

Predictions only

Length 2,167 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shank1D3YZU1 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
Shank1D3YZU1 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC25.44■■□□□ 1.66
Shank1D3YZU1 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
Shank1D3YZU1 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
Shank1D3YZU1 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC25.39■■□□□ 1.66
Shank1D3YZU1 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
Shank1D3YZU1 Zfp131-205ENSMUST00000223812 663 ntBASIC25.37■■□□□ 1.65
Shank1D3YZU1 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
Shank1D3YZU1 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
Shank1D3YZU1 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC25.25■■□□□ 1.63
Shank1D3YZU1 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC25.25■■□□□ 1.63
Shank1D3YZU1 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.63
Shank1D3YZU1 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
Shank1D3YZU1 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
Shank1D3YZU1 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC25.18■■□□□ 1.62
Shank1D3YZU1 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
Shank1D3YZU1 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
Shank1D3YZU1 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Shank1D3YZU1 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
Shank1D3YZU1 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
Shank1D3YZU1 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC25.11■■□□□ 1.61
Shank1D3YZU1 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Shank1D3YZU1 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
Shank1D3YZU1 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Shank1D3YZU1 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
Shank1D3YZU1 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
Shank1D3YZU1 Gm42596-201ENSMUST00000196305 1958 ntBASIC24.98■■□□□ 1.59
Shank1D3YZU1 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
Shank1D3YZU1 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
Shank1D3YZU1 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC24.96■■□□□ 1.59
Shank1D3YZU1 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC24.95■■□□□ 1.59
Shank1D3YZU1 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
Shank1D3YZU1 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
Shank1D3YZU1 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC24.91■■□□□ 1.58
Shank1D3YZU1 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
Shank1D3YZU1 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
Shank1D3YZU1 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
Shank1D3YZU1 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC24.88■■□□□ 1.57
Shank1D3YZU1 AC166822.3-201ENSMUST00000227394 661 ntBASIC24.87■■□□□ 1.57
Shank1D3YZU1 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
Shank1D3YZU1 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
Shank1D3YZU1 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC24.84■■□□□ 1.57
Shank1D3YZU1 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
Shank1D3YZU1 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC24.78■■□□□ 1.56
Shank1D3YZU1 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
Shank1D3YZU1 Gm10524-201ENSMUST00000181931 1893 ntBASIC24.76■■□□□ 1.55
Shank1D3YZU1 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
Shank1D3YZU1 CT025624.2-201ENSMUST00000223609 1909 ntBASIC24.75■■□□□ 1.55
Shank1D3YZU1 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
Shank1D3YZU1 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
Shank1D3YZU1 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Shank1D3YZU1 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Shank1D3YZU1 AL845457.1-201ENSMUST00000197244 68 ntBASIC24.66■■□□□ 1.54
Shank1D3YZU1 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC24.65■■□□□ 1.54
Shank1D3YZU1 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC24.62■■□□□ 1.53
Shank1D3YZU1 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
Shank1D3YZU1 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
Shank1D3YZU1 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC24.58■■□□□ 1.53
Shank1D3YZU1 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
Shank1D3YZU1 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC24.54■■□□□ 1.52
Shank1D3YZU1 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Shank1D3YZU1 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC24.53■■□□□ 1.52
Shank1D3YZU1 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC24.52■■□□□ 1.52
Shank1D3YZU1 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC24.51■■□□□ 1.51
Shank1D3YZU1 Gm16148-201ENSMUST00000119653 893 ntBASIC24.5■■□□□ 1.51
Shank1D3YZU1 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
Shank1D3YZU1 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC24.49■■□□□ 1.51
Shank1D3YZU1 Tdp2-203ENSMUST00000223804 1136 ntBASIC24.49■■□□□ 1.51
Shank1D3YZU1 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Shank1D3YZU1 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Shank1D3YZU1 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Shank1D3YZU1 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
Shank1D3YZU1 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC24.43■■□□□ 1.5
Shank1D3YZU1 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC24.42■■□□□ 1.5
Shank1D3YZU1 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Shank1D3YZU1 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
Shank1D3YZU1 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
Shank1D3YZU1 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Shank1D3YZU1 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC24.39■■□□□ 1.5
Shank1D3YZU1 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC24.39■■□□□ 1.49
Shank1D3YZU1 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC24.39■■□□□ 1.49
Shank1D3YZU1 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC24.36■■□□□ 1.49
Shank1D3YZU1 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC24.34■■□□□ 1.49
Shank1D3YZU1 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC24.3■■□□□ 1.48
Shank1D3YZU1 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC24.3■■□□□ 1.48
Shank1D3YZU1 Peli2-204ENSMUST00000226513 1320 ntBASIC24.3■■□□□ 1.48
Shank1D3YZU1 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Shank1D3YZU1 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
Shank1D3YZU1 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC24.26■■□□□ 1.47
Shank1D3YZU1 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
Shank1D3YZU1 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC24.25■■□□□ 1.47
Shank1D3YZU1 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC24.25■■□□□ 1.47
Shank1D3YZU1 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC24.23■■□□□ 1.47
Shank1D3YZU1 Gm45855-201ENSMUST00000212546 880 ntBASIC24.21■■□□□ 1.47
Shank1D3YZU1 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
Shank1D3YZU1 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC24.19■■□□□ 1.46
Shank1D3YZU1 Zfp131-207ENSMUST00000224946 1783 ntBASIC24.19■■□□□ 1.46
Shank1D3YZU1 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC24.19■■□□□ 1.46
Shank1D3YZU1 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
Shank1D3YZU1 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Retrieved 100 of 76,532 protein–RNA pairs in 23.8 ms