Protein–RNA interactions for Protein: A0A0B4J1K2

Trav9-4, T cell receptor alpha variable 9-4 (Fragment), mousemouse

Predictions only

Length 113 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav9-4A0A0B4J1K2 Gm25262-201ENSMUST00000174934 133 ntBASIC20.76■□□□□ 0.91
Trav9-4A0A0B4J1K2 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Trav9-4A0A0B4J1K2 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
Trav9-4A0A0B4J1K2 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Trav9-4A0A0B4J1K2 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
Trav9-4A0A0B4J1K2 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
Trav9-4A0A0B4J1K2 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Trav9-4A0A0B4J1K2 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC20.68■□□□□ 0.9
Trav9-4A0A0B4J1K2 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trav9-4A0A0B4J1K2 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trav9-4A0A0B4J1K2 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trav9-4A0A0B4J1K2 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Trav9-4A0A0B4J1K2 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC20.61■□□□□ 0.89
Trav9-4A0A0B4J1K2 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC20.59■□□□□ 0.89
Trav9-4A0A0B4J1K2 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trav9-4A0A0B4J1K2 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trav9-4A0A0B4J1K2 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trav9-4A0A0B4J1K2 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
Trav9-4A0A0B4J1K2 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trav9-4A0A0B4J1K2 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Trav9-4A0A0B4J1K2 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trav9-4A0A0B4J1K2 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trav9-4A0A0B4J1K2 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trav9-4A0A0B4J1K2 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Trav9-4A0A0B4J1K2 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC20.39■□□□□ 0.86
Trav9-4A0A0B4J1K2 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trav9-4A0A0B4J1K2 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trav9-4A0A0B4J1K2 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trav9-4A0A0B4J1K2 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
Trav9-4A0A0B4J1K2 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trav9-4A0A0B4J1K2 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Trav9-4A0A0B4J1K2 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC20.33■□□□□ 0.85
Trav9-4A0A0B4J1K2 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Trav9-4A0A0B4J1K2 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC20.31■□□□□ 0.84
Trav9-4A0A0B4J1K2 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trav9-4A0A0B4J1K2 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC20.3■□□□□ 0.84
Trav9-4A0A0B4J1K2 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trav9-4A0A0B4J1K2 Zfp131-207ENSMUST00000224946 1783 ntBASIC20.29■□□□□ 0.84
Trav9-4A0A0B4J1K2 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC20.28■□□□□ 0.84
Trav9-4A0A0B4J1K2 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC20.24■□□□□ 0.83
Trav9-4A0A0B4J1K2 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trav9-4A0A0B4J1K2 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trav9-4A0A0B4J1K2 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trav9-4A0A0B4J1K2 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trav9-4A0A0B4J1K2 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Trav9-4A0A0B4J1K2 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Trav9-4A0A0B4J1K2 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trav9-4A0A0B4J1K2 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Trav9-4A0A0B4J1K2 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Trav9-4A0A0B4J1K2 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Trav9-4A0A0B4J1K2 Gm26115-201ENSMUST00000175605 87 ntBASIC20.11■□□□□ 0.81
Trav9-4A0A0B4J1K2 Gm17082-201ENSMUST00000166043 1091 ntBASIC20.1■□□□□ 0.81
Trav9-4A0A0B4J1K2 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Trav9-4A0A0B4J1K2 AL845457.1-201ENSMUST00000197244 68 ntBASIC20.09■□□□□ 0.81
Trav9-4A0A0B4J1K2 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trav9-4A0A0B4J1K2 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
Trav9-4A0A0B4J1K2 Gm8109-201ENSMUST00000194076 746 ntBASIC20.07■□□□□ 0.8
Trav9-4A0A0B4J1K2 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
Trav9-4A0A0B4J1K2 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Trav9-4A0A0B4J1K2 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Trav9-4A0A0B4J1K2 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Trav9-4A0A0B4J1K2 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trav9-4A0A0B4J1K2 Gm27322-201ENSMUST00000184007 104 ntBASIC20.03■□□□□ 0.8
Trav9-4A0A0B4J1K2 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trav9-4A0A0B4J1K2 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trav9-4A0A0B4J1K2 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trav9-4A0A0B4J1K2 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trav9-4A0A0B4J1K2 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC19.98■□□□□ 0.79
Trav9-4A0A0B4J1K2 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Trav9-4A0A0B4J1K2 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trav9-4A0A0B4J1K2 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Trav9-4A0A0B4J1K2 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC19.95■□□□□ 0.78
Trav9-4A0A0B4J1K2 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Trav9-4A0A0B4J1K2 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Trav9-4A0A0B4J1K2 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
Trav9-4A0A0B4J1K2 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trav9-4A0A0B4J1K2 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Trav9-4A0A0B4J1K2 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
Trav9-4A0A0B4J1K2 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trav9-4A0A0B4J1K2 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
Trav9-4A0A0B4J1K2 Mipep-204ENSMUST00000225043 1548 ntBASIC19.83■□□□□ 0.77
Trav9-4A0A0B4J1K2 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC19.83■□□□□ 0.77
Trav9-4A0A0B4J1K2 AC166822.3-201ENSMUST00000227394 661 ntBASIC19.83■□□□□ 0.77
Trav9-4A0A0B4J1K2 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trav9-4A0A0B4J1K2 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
Trav9-4A0A0B4J1K2 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Trav9-4A0A0B4J1K2 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Trav9-4A0A0B4J1K2 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trav9-4A0A0B4J1K2 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trav9-4A0A0B4J1K2 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trav9-4A0A0B4J1K2 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Trav9-4A0A0B4J1K2 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trav9-4A0A0B4J1K2 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trav9-4A0A0B4J1K2 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Trav9-4A0A0B4J1K2 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trav9-4A0A0B4J1K2 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Trav9-4A0A0B4J1K2 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Trav9-4A0A0B4J1K2 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trav9-4A0A0B4J1K2 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC19.64■□□□□ 0.73
Trav9-4A0A0B4J1K2 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 7.8 ms